Table 7.
Testing the Local aligner based Improved IMO for finding LCCS of the surface glycoprotein of COVID-19.
| Protein ID | Method | Score | The obtained LCCS | |
|---|---|---|---|---|
| 1 | A0A329S877 | Smith–Waterman | 5 | VIRGD |
| SCA | 3 | IAN | ||
| ASCA-PSO | 5 | KLIAN | ||
| IMO | 2 | IA | ||
| Improved IMO | 5 | VIRGD | ||
| IMOG | 2 | LL | ||
| DIMO | 2 | FLV | ||
| 2 | A0A178ALB2 | Smith–Waterman | 4 | EPLV |
| SCA | 3 | SSG | ||
| ASCA-PSO | 4 | GAGA | ||
| IMO | 3 | KGV | ||
| Improved IMO | 4 | GAGA | ||
| IMOG | 3 | PGQT | ||
| DIMO | 3 | KGV | ||
| 3 | A0A1B8CCB5 | Smith–Waterman | 4 | SANN |
| SCA | 3 | CCS | ||
| ASCA-PSO | 4 | SANN | ||
| IMO | 2 | SA | ||
| Improved IMO | 4 | SANN | ||
| IMOG | 4 | CCSA | ||
| DIMO | 4 | LS | ||
| 4 | ATZ77013.1 | Smith–Waterman | 4 | KIAD |
| SCA | 3 | AYT | ||
| ASCA-PSO | 4 | KIAD | ||
| IMO | 2 | NL | ||
| Improved IMO | 4 | AYTL | ||
| IMOG | 3 | LYR | ||
| DIMO | 2 | SQ | ||
| 5 | 2H2Z_A | Smith–Waterman | 5 | DLEGK |
| SCA | 3 | DLL | ||
| ASCA-PSO | 5 | DLEGK | ||
| IMO | 3 | NGL | ||
| Improved IMO | 5 | DLEGK | ||
| IMOG | 2 | ED | ||
| DIMO | 3 | FLV | ||