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. 2020 Sep 2;10:14502. doi: 10.1038/s41598-020-71303-4

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Maximum Likelihood (ML) phylogenetic trees for (i) the structural genes VP60 + VP10 (n = 221 sequences; nucleotides 5,296–7,369; nucleotide substitution model GTR + G + Γ₄), and (ii) the non-structural genes except p16 (n = 221 sequences; nucleotides 430–5,295; nucleotide substitution model GTR + G + Γ₄). Horizontal branch lengths are drawn to scale of nucleotide substitutions per site and the trees are mid-point rooted. The percentage of trees in which the associated taxa clustered together was determined from 1,000 bootstrap replicates and is shown next to the branches (only bootstrap values ≥ 70 are shown). Genotype or variant assignment is according to the ML tree for the structural genes. Sequences obtained in this study appear boxed in grey. *indicates strains considered previously non-recombinant GI.2, but now identified as GI.3/GI.2 recombinants. GenBank accession numbers of the sequences used are listed in supplementary information.

Maximum Likelihood (ML) phylogenetic trees for (i) the structural genes VP60 + VP10 (n = 221 sequences; nucleotides 5,296–7,369; nucleotide substitution model GTR + G + Γ₄), and (ii) the non-structural genes except p16 (n = 221 sequences; nucleotides 430–5,295; nucleotide substitution model GTR + G + Γ₄). Horizontal branch lengths are drawn to scale of nucleotide substitutions per site and the trees are mid-point rooted. The percentage of trees in which the associated taxa clustered together was determined from 1,000 bootstrap replicates and is shown next to the branches (only bootstrap values ≥ 70 are shown). Genotype or variant assignment is according to the ML tree for the structural genes. Sequences obtained in this study appear boxed in grey. *indicates strains considered previously non-recombinant GI.2, but now identified as GI.3/GI.2 recombinants. GenBank accession numbers of the sequences used are listed in supplementary information.