Table 1.

Results of the RDP recombination analysis.

Strains	Recombination breakpoint (nucleotide positions)a	Most likely donor strain		Methods and average p-value
		Non-structural proteins	Structural proteins	RDP	GENECONV	BootScan	MaxChi	Chimaera	SiScan	3Seq
10-28 10-32 N11	5,242–5,319	06-11 (GI.3; accession number MN737115)	7-13 Barrancos (GI.2; accession number KF442963)	1.061 × 10–126	8.713 × 10–70	6.006 × 10–125	2.539 × 10–27	9.056 × 10–36	1.075 × 10–44	1.604 × 10–10
CBVal16 Zar11-11 Tar06-12 Zar06-12 Rij06-12 Seg08-12
16PLM1 NL2016 Canada2016
16-35
16-36	5,231–5,423	CHA20/09-100 (GI.3; accession number LT708128)	SOS155 (GI.2; accession number MG763946)	2.991 × 10–108	2.061 × 10–91	–	1.196 × 10–32	3.575 × 10–32	3.432 × 10–39	3.401 × 10–10

^a99% confidence interval.