Table 2.
Univariate statistical associations between clinical classification (case or control) and prevalence and loads of viruses in Clinch River pheasantshells.
| ID1 | Virus name | Individuals infected | Prevalence (%)2 | Viral load (Log10vRPM/kb)3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Controls | OR (95% CI) | P | Cases | Controls | U | P | |||
| A | Clinch densovirus 1 | 29 | 69.2 | 34.4 | 4.30 (1.42, 13) | 0.0084 | 1.057 | 0.396 | 40 | 0.0035 |
| B | Clinch narna-like virus 1 | 7 | 23.1 | 3.1 | 9.30 (1.041, 83.12) | 0.0267 | 0.601 | 0.074 | n/a | n/a |
| C | Clinch noda-like virus 1 | 3 | 11.5 | 0.0 | 9.68 (0.4771, 196.4) | 0.0360 | 0.512 | 0.000 | n/a | n/a |
| D | Clinch picorna-like virus 1 | 36 | 61.5 | 62.5 | 0.96 (0.3306, 2.788) | 0.9999 | 0.992 | 0.225 | 78 | 0.00415 |
| E | Clinch CRESS virus 1 | 32 | 57.7 | 53.1 | 1.20 (0.4241, 3.413) | 0.4676 | 0.911 | 0.544 | 80 | 0.03785 |
| F | Clinch picorna-like virus 2 | 18 | 34.6 | 28.1 | 1.35 (0.443, 4.132) | 0.4017 | 0.628 | 0.289 | 21 | 0.0939 |
| G | Clinch picorna-like virus 3 | 3 | 11.5 | 0.0 | 9.68 (0.4771, 196.4) | 0.0843 | 0.657 | 0.000 | n/a | n/a |
| H | Clinch circular virus 1 | 15 | 34.6 | 18.8 | 2.29 (0.6908, 7.619) | 0.1423 | 0.737 | 0.592 | 17 | 0.13605 |
| I | Clinch calicivirus 1 | 14 | 23.1 | 25.0 | 0.90 (0.2675, 3.028) | 0.9999 | 0.630 | 0.254 | 6 | 0.1725 |
| J | Clinch circular virus 2 | 42 | 69.2 | 75.0 | 0.75 (0.2363, 2.38) | 0.8435 | 0.930 | 0.946 | 207 | 0.8308 |
| K | Clinch dicistro-like virus 1 | 2 | 7.7 | 0.0 | 6.63 (0.3045, 144.5) | 0.1966 | 0.638 | 0.000 | n/a | n/a |
| L | Clinch tombus-like virus 1 | 4 | 11.5 | 3.1 | 4.04 (0.3948, 41.41) | 0.2314 | 0.567 | 0.471 | n/a | n/a |
| M | Clinch sobemo-like virus 1 | 4 | 3.8 | 9.4 | 0.39 (0.03779, 3.956) | 0.7774 | 0.895 | 0.092 | n/a | n/a |
| N | Clinch dicistro-like virus 2 | 3 | 7.7 | 3.1 | 2.58 (0.221, 30.2) | 0.4213 | 0.859 | 0.101 | n/a | n/a |
| O | Clinch picobirnavirus 1 | 1 | 3.8 | 0.0 | 3.82 (0.1494, 97.84) | 0.4483 | 1.048 | 0.000 | n/a | n/a |
| P | Clinch picobirna-like virus 1 | 1 | 3.8 | 0.0 | 3.82 (0.1494, 97.84) | 0.4483 | 1.473 | 0.000 | n/a | n/a |
| Q | Clinch totivirus 1 | 1 | 3.8 | 0.0 | 3.82 (0.1494, 97.84) | 0.4483 | 1.727 | 0.000 | n/a | n/a |
1Letters refer to Table 1, Figs. 3, and S1.
2Percentage of mussels within each group (case or control) with reads mapping to each virus, plus odds ratios and 95% confidence intervals. P values (statistically significant values in bold) were calculated using Fisher's exact tests.
3Log10 reads mapping to each virus per million total reads per kilobase of target sequence, Mann–Whitney U statistics, and associated P values (infected mussels only).