Table 1. The genes and encoded protein features of the 30 BnCCDs identified in this study.
| Gene name | Gene ID | Subgroup | Chromosome | Gene length (bp) | Gene position | Number of exons | Protein length (aa) | Molecular wt. (kDa) | pI | GRAVY | Subcellular location | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Start | End | |||||||||||
| BnCCD1a | BnaA09g41150D | I | A09 | 4466 | 28783045 | 28787510 | 13 | 483 | 55.24182 | 6.36 | −0.175 | chlo: 5, cyto: 2, vacu: 2, E.R.: 2, nucl: 1, pero: 1 |
| BnCCD1b | BnaAnng12520D | I | Ann_random | 3193 | 13541287 | 13544479 | 13 | 525 | 59.31523 | 5.70 | −0.256 | cyto: 7, chlo: 3, nucl: 1, mito: 1, plas: 1 |
| BnCCD1c | BnaC04g20610D | I | C04 | 3267 | 21697508 | 21700774 | 14 | 525 | 59.35633 | 5.94 | −0.257 | cyto: 10, chlo: 2, plas: 1 |
| BnCCD1d | BnaC08g33680D | I | C08 | 8770 | 32058916 | 32067685 | 14 | 612 | 69.62388 | 6.95 | −0.367 | chlo: 9, mito: 3, nucl: 1 |
| BnCCD1e | BnaC08g33690D | I | C08 | 7652 | 32077226 | 32084877 | 15 | 611 | 69.52093 | 6.41 | −0.289 | chlo: 14 |
| BnNCED2a | BnaA01g09090D | II | A01 | 1746 | 4447853 | 4449598 | 1 | 581 | 64.52248 | 5.33 | −0.224 | chlo: 9.5, chlo_mito: 5.5, cyto: 1, plas: 1, vacu: 1 |
| BnNCED2b | BnaA03g58230D | II | A03_random | 1752 | 1600131 | 1601882 | 1 | 583 | 64.95409 | 5.49 | −0.237 | chlo: 6, cyto: 5, plas: 1.5, cysk_plas: 1.5 |
| BnNCED2c | BnaC01g10770D | II | C01 | 1746 | 6588592 | 6590337 | 1 | 581 | 64.51950 | 5.31 | −0.214 | chlo: 9, cyto: 4 |
| BnNCED2d | BnaC07g35240D | II | C07 | 1752 | 37711814 | 37713565 | 1 | 583 | 64.82201 | 5.55 | −0.243 | chlo: 7, cyto: 4, plas: 1.5, cysk_plas: 1.5 |
| BnNCED3a | BnaA01g29390D | III | A01 | 1662 | 20329204 | 20331002 | 2 | 553 | 60.99077 | 5.28 | −0.287 | mito: 10, chlo: 4 |
| BnNCED3b | BnaA03g33390D | III | A03 | 1191 | 16162114 | 16163388 | 2 | 396 | 44.24510 | 4.99 | −0.242 | cyto: 6, cysk: 6, mito: 1 |
| BnNCED3c | BnaA05g25030D | III | A05 | 1794 | 18611263 | 18613467 | 1 | 597 | 65.80847 | 5.94 | −0.297 | mito: 8, chlo: 6 |
| BnNCED3d | BnaC01g36910D | III | C01 | 1797 | 36059468 | 36061576 | 1 | 598 | 65.72044 | 5.89 | −0.276 | mito: 8, chlo: 6 |
| BnNCED3e | BnaC05g39180D | III | C05 | 948 | 37757359 | 37758306 | 1 | 315 | 34.06851 | 8.83 | −0.291 | mito: 11, chlo: 3 |
| BnNCED3f | BnaC05g39190D | III | C05 | 768 | 37758388 | 37759155 | 1 | 255 | 28.64751 | 4.75 | −0.217 | cyto: 8, cysk: 4, plas: 1 |
| BnNCED3g | BnaC05g39200D | III | C05 | 1794 | 37769098 | 37770891 | 1 | 597 | 65.84553 | 6.01 | −0.318 | mito: 9, chlo: 5 |
| BnNCED3h | BnaCnng32080D | III | Cnn_random | 1194 | 30423020 | 30424656 | 2 | 396 | 44.29825 | 5.09 | −0.219 | cysk: 8, cyto: 4, mito: 1 |
| BnCCD4a | BnaA01g09900D | IV | A01 | 2020 | 4881104 | 4883125 | 1 | 596 | 65.70485 | 6.33 | −0.236 | chlo: 12, mito: 1.5, cyto_mito: 1.5 |
| BnCCD4b | BnaA08g09110D | IV | A08 | 1782 | 8767981 | 8769762 | 3 | 532 | 58.57082 | 6.16 | −0.129 | chlo: 12, cyto: 1 |
| BnCCD4c | BnaC01g11550D | IV | C01 | 2067 | 7220281 | 7222347 | 1 | 593 | 65.43358 | 6.45 | −0.234 | chlo: 12, mito: 1.5, cyto_mito: 1.5 |
| BnNCED5a | BnaA09g26450D | V | A09 | 1170 | 19605914 | 19607683 | 1 | 589 | 65.33387 | 5.37 | −0.324 | chlo: 11, nucl: 2 |
| BnNCED5b | BnaCnng38510D | V | Cnn_random | 1170 | 37143600 | 37145369 | 1 | 589 | 65.45993 | 5.42 | −0.320 | chlo: 11, nucl: 1, mito: 1 |
| BnNCED6a | BnaA07g06050D | VI | A07 | 1758 | 6379220 | 6380977 | 1 | 585 | 65.00222 | 6.07 | −0.321 | chlo: 7.5, chlo_mito: 6.5, mito: 4.5 |
| BnNCED6b | BnaC07g07580D | VI | C07 | 1758 | 11978406 | 11980163 | 1 | 585 | 65.06919 | 6.00 | −0.329 | pero: 8, chlo: 3, cyto: 2 |
| BnCCD7a | BnaA04g26000D | VII | A04 | 5803 | 18550548 | 18556350 | 10 | 668 | 74.78965 | 5.77 | −0.381 | chlo: 9, plas: 3, mito: 1 |
| BnCCD7b | BnaC04g50070D | VII | C04 | 3912 | 47874505 | 47878416 | 9 | 648 | 72.69485 | 6.19 | −0.303 | chlo: 8, plas: 3, mito: 1, vacu: 1 |
| BnCCD8a | BnaA01g04140D | VIII | A01 | 3287 | 1908477 | 1911763 | 6 | 569 | 63.98902 | 7.13 | −0.341 | chlo: 10, mito: 3 |
| BnCCD8b | BnaC01g05600D | VIII | C01 | 12036 | 2963042 | 2975077 | 7 | 574 | 64.98737 | 8.50 | −0.452 | chlo: 7, cyto: 4, nucl: 2 |
| BnNCED9a | BnaA07g39250D | IX | A07_random | 1809 | 2059180 | 2060988 | 1 | 602 | 66.75458 | 5.90 | −0.299 | chlo: 14 |
| BnNCED9b | BnaC06g38870D | IX | C06 | 1809 | 36264799 | 36266607 | 1 | 602 | 66.79169 | 6.11 | −0.281 | chlo: 14 |
chlo: chloroplast; cyto: cytoplasmic; vacu: vacuolar; E.R: Endoplasmic Reticulum; pero: peroxisomal; mito: mitochondria; nucl: nucleus; plas: plasma membrane.