Table 2. Estimated odds ratio (OR) for EwS rare variants adjusting for different model covariates.
Wald method (unadjusted) | Mantel-Haenszel (study) | Mantel-Haenszel (study and variant1) | |||||
---|---|---|---|---|---|---|---|
Rare SNP | Common SNP | OR (95% CI) | Fisher’s P-value | OR (95% CI) | P-value | OR (95% CI) | P-value |
rs112837127 | rs6106336 | 0.19 (0.10 to 0.39) | 1.64×10−8 | 0.18 (0.08 to 0.37) | 6.90×10−9 | 0.20 (0.09 to 0.40) | 5.84×10−8 |
rs2296730 | rs6106336, rs6047482 | 2.04 (1.58 to 2.69) | 9.78×10−9 | 2.11 (1.60 to 2.77) | 4.92×10−8 | 1.61 (1.16 to 2.24) | 3.50×10−3 |
Models use a dominant allele coding for minor alleles with each individual as the analysis unit.
1Adjustment for contributing study and nearby common SNP(s).