Table 3. Comparison of the performances of risk group predictions using benchmark methods and the proposed methods (scP.V and scP.W).
PAM50 | Mamma | RS | GGI97 | Endo | LM | scP.V | scP.W | |
---|---|---|---|---|---|---|---|---|
TCGA(OS) | 1.45 | 0.95 | 1.33 | 0.87 | 0.87 | 1.43 | 1.76 | 1.32 |
TCGA(RF) | 1.61 | 1.01 | 1.26 | 0.97 | 1.17 | 1.09 | 1.30 | 1.45 |
METABRIC(OS) | 4.90 | 4.67 | 5.99 | 2.51 | 4.80 | 3.60 | 4.71 | 6.07 |
METABRIC(RF) | 5.17 | 3.87 | 5.29 | 2.47 | 7.16 | 3.95 | 5.93 | 5.45 |
GEO | 1.20 | 1.52 | 2.50 | 0.91 | 1.85 | 0.86 | 1.37 | 1.51 |
UK | 1.54 | 1.72 | 1.62 | 1.68 | 2.17 | 1.74 | 2.90 | 3.27 |
Mean rank | 4.83 | 3.33 | 5.33 | 1.58 | 5.25 | 3.33 | 6.00 | 6.33 |
The top-performing result is highlighted for each dataset. The reported hazard ratio is the average hazard ratio of 100 runs of 10-fold cross-validation on each dataset.