Table 3.
Locus | Forward | Reverse | Size (bp) | SSR motif | NA | HO | HE | PIC | HWE | GenBank accession number |
---|---|---|---|---|---|---|---|---|---|---|
Av02 | AAAAATGGGCAATGGTGGGC | AGGCGTAGGTGAAGAGGAGT | 224 | (AT)11 | 5 | 0.515 | 0.511 | 0.462 | NS | MT737291 |
Av08 | AATCAGCCACCGAGTTACCG | ACCTCCTGCAAGCTGAATCC | 220 | (CAT)6 | 5 | 0.653 | 0.639 | 0.574 | NS | MT737292 |
Av13 | ACGAGAAGTTGGAAACAGACCA | GTATTTGGTGTCTTCGGCGC | 269 | (GT)6 | 3 | 0.050 | 0.049 | 0.048 | ND | MT737293 |
Av15 | ACTCGTTGGACATGATGTGCT | GGACCTTCTCATCAGCCTCG | 208 | (CT)8 | 3 | 0.228 | 0.204 | 0.184 | ND | MT737294 |
Av21 | AGCAGGGGAGAAGAATGCAC | GGGTCTTGATGAGGTGAGGG | 250 | (ACAA)6 | 4 | 0.109 | 0.114 | 0.110 | ND | MT737295 |
Av33 | CCAAACCACACAGCTCAACG | CCAAACCACACAGCTCAACG | 180 | (AT)9 | 3 | 0.337 | 0.339 | 0.312 | ND | MT737296 |
Av39 | CGCTTGCTGCCTCATCATTC | CCCTCTCACACCATCCCAAC | 271 | (TGC)6 | 3 | 0.545 | 0.651 | 0.575 | NS | MT737297 |
Av43 | CTGCATTCCCGCAAGTAACAG | TGATGCAGCTTAGGAGGGTC | 258 | (AAG)5 | 2 | 0.356 | 0.294 | 0.250 | ND | MT737298 |
Av55 | GCTCCGAGAAATCCTGCTCA | GCACTGCACCCTCCTACTAC | 218 | (AG)9 | 3 | 0.030 | 0.030 | 0.029 | ND | MT737299 |
Av63 | GGGTTTTGCTTCTGGGCATG | GAGCCAATCCGAACCCCAC | 157 | (TC)9 | 2 | 0.327 | 0.301 | 0.254 | ND | MT737300 |
Av75 | TCACTAGTACCCACCACCCC | AGTGGTGGCGTTGCTATGAA | 212 | (GT)6(AT)6 | 2 | 0.485 | 0.490 | 0.369 | NS | MT737301 |
Av88 | TGCATCATGTAGGGTACACACC | GCAAGTGTTCGCTGAGTTCC | 159 | (AAT)7 | 4 | 0.396 | 0.487 | 0.400 | NS | MT737302 |
Mean | 3.25 | 0.336 | 0.342 | 0.297 |
Notes: NA number of alleles, HO observed heterozygosity, HE expected heterozygosity, PIC polymorphism information content, HWE Hardy-Weinberg equilibrium, NS Not significant for departure from HWE, ND Not detected for departure from HWE