Table 2.

Comparison of NanoString nCounter and small RNA-sequencing analyses

SnoRNA	NanoString fold change	NanoString P-value	Small RNA- Seq fold change	Small RNA-Seq P-value	Expression trend upon RA differentiation
Differentially expressed snoRNAs in both analyses
Snora27	0.24	0.028	0.14	6.26 × 10−6	Down
Snora32	0.16	0.00022	0.36	0.0076	Down
Snora33	0.49	0.023	0.35	0.0004	Down
Snora4	0.32	0.014	0.11	5.69 × 10−7	Down
Snora43	0.28	6.71 × 10−7	0.05	1.77 × 10−44	Down
Snora30	3.45	0.0012	2.38	0.0009	Up
Snora36b	3.57	0.0076	2.50	0.031	Up
Snora38	3.37	2.67 × 10−5	4.35	0.023	Up
Snora47	5.88	0.00066	3.45	3.07 × 10−6	Up
Snora49	2.50	0.0012	2.63	0.015	Up
Snora53	2.22	0.037	3.23	0.01	Up
Snora54	2.78	0.0024	2.94	0.0066	Up
Differentially expressed snoRNAs in the NanoString analysis only
Snora40	0.18	0.0011	0.57	0.205	Down
Snora66	0.50	0.049	0.68	0.5	Down
Snora28	2.27	0.0023	1.89	0.05	Up
Snora71	0.38	0.00028	2.08	0.16
Differentially expressed snoRNAs in the small RNA-seq analysis only
Snora1	0.51	0.087	0.13	5.86 × 10−11	Down
Snora15	0.73	0.21	0.31	0.005	Down
Snora26	0.90	0.04	0.11	9.66 × 10−7	Down
Snora44	0.64	0.003	0.16	4.82 × 10−12	Down
Snora57	0.65	0.00013	0.27	0.0018	Down
Snora67	0.71	0.0047	0.19	4.56 × 10−9	Down
Snora14	1.54	0.006	4.76	0.014	Up
Snora46	2.63	0.16	2.50	0.0025	Up
Snora55	1.32	0.035	2.63	0.042	Up
Snora68	1.45	0.007	2.08	0.04	Up
Snora58	n.d.	n.d.	2.04	0.0099	Up
Snora64	1.05	0.91	2.44	0.033	Up
Snora2b	1.49	0.38	0.28	2.53 × 10−7