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. 2020 Jul 28;12(8):819. doi: 10.3390/v12080819

Figure 1.

Figure 1

Frequency and relative predominance of Begomovirus species and single-stranded DNA viruses detected with Illumina Hiseq sequencing of tomato samples with (n = 43) and without (n = 64) the Ty-1 gene. Results were validated by PCR assays with virus-specific primers and by Sanger dideoxy sequencing. Viruses found were Tomato severe rugose virus (ToSRV); Tomato golden vein virus (TGVV); Tomato chlorotic mottle virus (ToCMoV); Tomato rugose mosaic virus (ToRMV); Tomato mottle leaf curl virus (ToMoLCV); Sida micrantha mosaic virus (SiMMV); Bean golden mosaic virus (BGMV); Tomato common mosaic virus (ToCmMV); Euphorbia yellow mosaic virus (EuYMV); and Cleome leaf crumple virus (CILCrV). A new alpha-satellite species and three putative novel begomovirus species (=new species #1, new species #2, and new species #3) were also detected. Black bars in each line indicate the presence of a given virus in a given individual sample = isolates (left column). Isolate with GO abbreviation = isolates collected in Goiás State; DF abbreviation = isolates collected in the Federal District; and MG abbreviation = isolates collected in Minas Gerais State, in central Brazil.