Table 4.
Viral circular, single-stranded DNA species (and their corresponding GenBank accessions) detected after Illumina Hiseq sequencing in the pool of tomato DNA samples lacking the Ty-1 gene.
| Viral Species | No. of Reads | Size (nts) | GenBank Accession Numbers |
|---|---|---|---|
| Bean golden mosaic virus (BGMV) DNA-A | 63,525 | 2626 | MT214083 |
| Cleome leaf crumple virus (CILCrV) DNA-A | 566 | 2560 | MN337873 |
| Cleome leaf crumple virus (CILCrV) DNA-B | 702 | 2664 | MN337872 |
| Tomato severe rugose virus (ToSRV) DNA-A | 3,225,120 | 2593 | MT214084 |
| Tomato severe rugose virus (ToSRV) DNA-B | 4,018,351 | 2572 | MT214085 |
| Euphorbia yellow mosaic virus (EuYMV) DNA-A | 1122 | 2609 | MN746971 |
| Euphorbia yellow mosaic virus (EuYMV) DNA-B | 1822 | 2579 | MN746970 |
| Tomato chlorotic mottle virus (ToCMoV) DNA-A | 5,971,019 | 2620 | MT214086 |
| Tomato chlorotic mottle virus (ToCMoV) DNA-B | 1,111,227 | 2600 | MT214087 |
| Tomato golden vein virus (TGVV) DNA-A | 2,639,961 | 2562 | MN928610 |
| Tomato golden vein virus (TGVV) DNA-B | 977,027 | 2512 | MN928611 |
| Tomato mottle leaf curl virus (ToMLCV) DNA-A | 1,784,881 | 2632 | MT214088 |
| Tomato common mosaic virus (ToCmMV) DNA-A | 1,070,674 | 2560 | MT214089 |
| Tomato rugose mosaic virus (ToRMV) DNA-A | 3,267,808 | 2619 | MT214090 |
| Tomato rugose mosaic virus (ToRMV) DNA-B | 4,742,730 | 2571 | MT214091 |
| Sida micrantha mosaic virus (SiMMV) DNA-A | 1,221,062 | 2688 | MT214092 |
| Plant-associated genomovirus 2 | 119 | 2189 | MT214094 |
| New Begomovirus Species #2 DNA-A | 427,646 | 2649 | MT214095 |
| New Begomovirus Species #3 DNA-A | 2839 | 2636 | MT214096 |
| New alpha-satellite | 155,793 | 1321 | MT214093 |