Table 5.
Viral circular, single-stranded DNA species (and their corresponding GenBank accessions) detected after Illumina Hiseq sequencing in the pool of tomato DNA samples harboring the Ty-1 gene.
| Viral Species | N° of Reads | Size (nts) | GenBank Accession Numbers |
|---|---|---|---|
| Tomato severe rugose virus (ToSRV) DNA-A | 7,181,771 | 2592 | MT215001 |
| Tomato severe rugose virus (ToSRV) DNA-B | 5,782,296 | 2570 | MT215002 |
| Tomato golden vein virus (TGVV) DNA-A | 2,358,838 | 2561 | MN928612 |
| Tomato golden vein virus (TGVV) DNA-B | 1,401,684 | 2590 | MN928613 |
| Tomato chlorotic mottle virus (ToCMoV) DNA-A | 4,519,040 | 2623 | MT215003 |
| Tomato chlorotic mottle virus (ToCMoV) DNA-B | 811,733 | 2565 | MT215004 |
| Tomato mottle leaf curl virus (ToMLCV) DNA-A | 2,644,606 | 2631 | MT215005 |
| Tomato rugose mosaic virus (ToRMV) DNA-A | 7,964,942 | 2618 | MT215006 |
| Tomato rugose mosaic virus (ToRMV) DNA-B | 5,780,864 | 2649 | MT215007 |
| New Begomovirus Species #1 DNA-A | 1,270,494 | 2605 | MN147863 |
| New Begomovirus Species #1 DNA-B | 84,022 | 2625 | MN147864 |