Table 6.
Relative frequency of Begomovirus and other circular single-stranded DNA viruses detected after Illumina Hiseq sequencing of 63 tomato DNA samples lacking the Ty-1 gene.
| Viral Species* Followed by the Respective Number of Occurrences in Each Region | Goiás State (GO) | Federal District (DF) | Minas Gerais State (MG) |
|---|---|---|---|
|
ToSRV
(32 + 9 + 5) = 46 |
GO-046, GO-109, GO-118, GO-120, GO-130, GO-134, GO-136, GO-137, GO-142, GO-143, GO-144, GO-168, GO-169, GO-191, GO-192, GO-221, GO-244, GO-245, GO-248, GO-249, GO-250, GO-251, GO-298, GO-299, GO-301, GO-322, GO-336, GO-390, GO-493, GO-505, GO-511, GO-594 | DF-043, DF-166, DF-167, DF-211, DF-447, DF-453, DF-544, DF-566, DF-667 | MG-012, MG-018, MG-029, MG-150, MG-388 |
|
TGVV
(23 + 8 + 5) = 36 |
GO-046, GO-109, GO-130, GO-134, GO-137, GO-142, GO-143, GO-168, GO-169, GO-191, GO-192, GO-221, GO-244, GO-245, GO-248, GO-249, GO-250, GO-298, GO-299, GO-301, GO-322, GO-336, GO-493 | DF-023, DF-028, DF-045, DF-046, DF-050, DF-062, DF-167, DF-211 | MG-015, MG-016, MG-018, MG-029, MG-046 |
|
ToCMoV
(21 + 8+5) = 34 |
GO-023, GO-046, GO-109, GO-111, GO-120, GO-130, GO-134, GO-136, GO-137, GO-143, GO-144, GO-191, GO-245, GO-249, GO-250, GO-251, GO-298, GO-299, GO-301, GO-322, GO-390 | DF-018, DF-028, DF-043, DF-045, DF-046, DF-050, DF-167, DF-566 | MG-015, MG-018, MG-046, MG-073, MG-150 |
|
ToCmMV
(1 + 0 + 1) = 2 |
GO-023 | --- | MG-388 |
|
BGMV
(1 + 2 + 0) = 3 |
GO-142 | DF-045, DF-046 | --- |
|
CILCrV
(0 + 0 + 1) = 1 |
--- | --- | MG-150 |
|
EuYMV
(0 + 0 + 2) = 2 |
--- | --- | MG-012, MG-016 |
|
ToMLCV
(4 + 8 + 1) = 13 |
GO-299, GO-384, GO-505, GO-594 | DF-018, DF-023, DF-028, DF-050, DF-062, DF-330, DF-453, DF-566 | MG-325. |
|
ToRMV
(19 + 1 + 1) = 21 |
GO-109, GO-118, GO-130, GO-134, GO-136, GO-137, GO-143, GO-144, GO-168, GO-191, GO-192, GO-244, GO-248, GO-250, GO-251, GO-298, GO-322, GO-336, GO-505 | DF-043 | MG-150 |
|
SiMMV
(8 + 3 + 0) = 11 |
GO-118, GO-120, GO-134, GO-168, GO-245, GO-248, GO-301, GO-511 | DF-045, DF-050, DF-166 | --- |
|
Plant-associated genomovirus 2
(2 + 0 + 0) = 2 |
GO-298, GO-301 | --- | --- |
|
Alpha-satellite
(0 + 4 + 0) = 4 |
--- | DF-023, DF-028, DF-050, DF-062 | --- |
|
New Begomovirus species #2
(0 + 0 + 1) = 1 |
--- | --- | MG-378 |
|
New Begomovirus species #3
(1 + 0 + 0) = 1 |
GO-169 | --- | --- |
* ToSRV = Tomato severe rugose virus, TGVV = Tomato golden vein virus, ToCMoV = Tomato chlorotic mottle virus, ToCmMV = Tomato common mosaic virus, BGMV = Bean golden mosaic virus, CILCrV = Cleome leaf crumple virus, EuYMV = Euphorbia yellow mosaic virus, ToMLCV = Tomato mottle leaf curl virus, ToRMV = Tomato rugose mosaic virus, and SiMMV = Sida micrantha mosaic virus.