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. 2020 Aug 5;12(8):855. doi: 10.3390/v12080855

Table 3.

Detail on bat samples in which coronavirus sequences have been amplified. Sites are abbreviated as in Table 1.

Sample Collection Date Prefecture Site Environment Species Type of Sample Accession Number
Rectal Swab Feces Oral Swab
CCGU00021 18 February 2016 Conakry CN city garden Epomophorus gambianus β-CoV na – MT586830
CCGU00033 21 February 2016 Conakry CN city garden Epomophorus gambianus β-CoV na – MT586831
CCGU00035 21 February 2016 Conakry CN city garden Epomophorus gambianus – β-CoV – MT586832
CCGU00039 20 April 2016 Conakry CN city garden Eidolon helvum β-CoV na – MT586833
CCGU00040 20 April 2016 Conakry CN city garden Eidolon helvum β-CoV na – MT586834
CCGU00041 20 April 2016 Conakry CN city garden Eidolon helvum β-CoV na – MT586835
CCGU00081 31 May 2016 Kindia KN cave/village Hipposideros ruber na α-CoV – MT586836
CCGU00082 31 May 2016 Kindia KN cave/village Hipposideros ruber α-CoV na – MT586837
CCGU00085 1 31 May 2016 Kindia KN cave/village Hipposideros ruber na α-CoV α-CoV MT586838; MT586839
CCGU00086 31 May 2016 Kindia KN cave/village Hipposideros ruber na β-CoV – MT586840
CCGU00087 1 31 May 2016 Kindia KN cave/village Hipposideros ruber α-CoV na α-CoV MT58684; MT586842
CCGU00090 31 May 2016 Kindia KN cave/village Hipposideros ruber α-CoV na – MT586843
CCGU00102 21 July 2016 Koundara GN cave/village Lissonycteris angolensis β-CoV na – MT586844
CCGU00104 21 July 2016 Koundara GN cave/village Lissonycteris angolensis β-CoV na – MT586845
CCGU00115 22 July 2016 Koundara GN village Rousettus aegyptiacus – na α-CoV MT586846
CCGU00137 24 July 2016 Koundara YK village Epomophorus gambianus β-CoV na – MT586847
CCGU00142 27 July 2016 Koundara SA village Epomophorus gambianus β-CoV na – MT586848
CCGU00168 22 September 2016 Kankan KK cave/forest Rhinolophus darlingi na α-CoV – MT586849
CCGU00200 25 September 2016 Kankan KK cave/forest Rhinolophus darlingi na α-CoV – MT586850
CCGU00235 28 September 2016 Kankan BN cave Nycteris macrotis na β-CoV – MT586851
CCGU00269 29 September 2016 Kankan BN cave Hipposideros ruber na β-CoV – MT586852
CCGU00316 27 October 2016 Kindia MO cave/forest Rousettus aegyptiacus β-CoV na – MT586853
CCGU00337 29 October 2016 Kindia MO plantation Rousettus aegyptiacus β-CoV na – MT586854
CCGU00399 2 November 2016 Kindia SG cave/forest Rousettus aegyptiacus β-CoV na – MT586855
CCGU00424 3 November 2016 Kindia SG forest Rousettus aegyptiacus β-CoV na – MT586856
CCGU00445 5 December 2016 Gueckedou TM cave/forest Rousettus aegyptiacus – na α-CoV MT586857
CCGU00453 6 December 2016 Gueckedou TM village Rousettus aegyptiacus β-CoV na α-CoV MT586858-586859
CCGU00458 6 December 2016 Gueckedou TM village Rousettus aegyptiacus – na α-CoV MT586860
CCGU00467 7 December 2016 Gueckedou TM village Rousettus aegyptiacus – na α-CoV MT586861
CCGU00477 7 December 2016 Gueckedou TM village Rousettus aegyptiacus α-CoV na – MT586862
CCGU00481 7 December 2016 Gueckedou TM village Rousettus aegyptiacus – na α-CoV MT586863
CCGU00489 10 December 2016 Gueckedou GK village Nanonycteris veldkampii β-CoV na – MT586864
CCGU00499 12 December 2016 Macenta MA city Rousettus aegyptiacus β-CoV na – MT586865
CCGU00502 12 December 2016 Macenta MA city Eidolon helvum β-CoV na – MT586866
CCGU00550 9 January 2017 Mamou KR cave/forest Lissonycteris angolensis α-CoV na – MT586867

1 identical sequences in both swabs; α-CoV—alphacoronavirus; β-CoV—betacoronavirus; na—no sample; –: PCR-negative sample.