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. 2020 Aug 21;11:2028. doi: 10.3389/fmicb.2020.02028

TABLE 1.

Dataset description.

Data Seta,b DNA Extraction Sequencing Bioinformatic Processing Sample Count Min Depth Max Depth ASV/OTUc Count
Unpooled MMESP MM MM MM 59 1,029 32,305 400
UTESP UT UT UT 64 1,022 167,922 757
UTESMMP UT UT MM 58 1,125 114,877 396
UTEMMSP UT MM MM 61 2,745 33,415 403
UMESP UM UM UM 64 5,480 273,886 289
UMESMMP UM UM MM 62 1,963 103,781 418
UMEMMSP UM MM MM 60 1,445 24,413 411
Pooled PE All MM MM
PS All All MM
PP All All All

aE, Extraction; S, Sequencing; P, Bioinformatic Processing. bPE, pooled post-extraction; PS, pooled post-sequencing; PP, pooled post-bioinformatic processing. All pooled data sets consist of samples randomly drawn from unpooled data sets. cASV, Amplicon Sequence Variant; OTU, Operational Taxonomic Unit.