TABLE 1.
Dataset description.
Data Seta,b | DNA Extraction | Sequencing | Bioinformatic Processing | Sample Count | Min Depth | Max Depth | ASV/OTUc Count | |
Unpooled | MMESP | MM | MM | MM | 59 | 1,029 | 32,305 | 400 |
UTESP | UT | UT | UT | 64 | 1,022 | 167,922 | 757 | |
UTESMMP | UT | UT | MM | 58 | 1,125 | 114,877 | 396 | |
UTEMMSP | UT | MM | MM | 61 | 2,745 | 33,415 | 403 | |
UMESP | UM | UM | UM | 64 | 5,480 | 273,886 | 289 | |
UMESMMP | UM | UM | MM | 62 | 1,963 | 103,781 | 418 | |
UMEMMSP | UM | MM | MM | 60 | 1,445 | 24,413 | 411 | |
Pooled | PE | All | MM | MM | ||||
PS | All | All | MM | |||||
PP | All | All | All |
aE, Extraction; S, Sequencing; P, Bioinformatic Processing. bPE, pooled post-extraction; PS, pooled post-sequencing; PP, pooled post-bioinformatic processing. All pooled data sets consist of samples randomly drawn from unpooled data sets. cASV, Amplicon Sequence Variant; OTU, Operational Taxonomic Unit.