TABLE 4.
Genome assembly characteristics and quality check.
Attribute | Value |
# contigs | 119 |
# contigs (≥0 bp) | 119 |
# contigs (≥1000 bp) | 119 |
# contigs (≥5000 bp) | 106 |
# contigs (≥10000 bp) | 90 |
# contigs (≥25000 bp) | 61 |
# contigs (≥50000 bp) | 32 |
Largest contig | 392,027 |
Total length | 4,880,137 |
Total length (≥0 bp) | 4,880,137 |
Total length (≥1000 bp) | 4,880,137 |
Total length (≥5000 bp) | 4,823,868 |
Total length (≥10000 bp) | 4,710,190 |
Total length (≥25000 bp) | 4,229,606 |
Total length (≥50000 bp) | 3,215,408 |
N50 | 66,629 |
N75 | 35,634 |
L50 | 19 |
L75 | 43 |
GC (%) | 74.16 |
# N’s | 0 |
# N’s per 100 kbp | 0 |
Coverage | 100× |
Coding sequences | 4872 |
Finishing quality | High-quality draft |
Library used | Illumina paired-end |
Assembler | Spades v3.2 |