Table 3.
S. no. | Pathway | Gene set | Regressor | HR | p-val | C |
---|---|---|---|---|---|---|
1 | NRF2 | Combined | Ridge | 2.17 | 3 × 10−6 | 0.60 |
2 | P53 | Combined | RF | 2.04 | 1 × 10−5 | 0.59 |
3∗ | Apoptosis | GPM | RF | 2.24 | 1.2x10−6 | 0.59 |
4 | WNT | Combined | RF | 2.22 | 2 × 10−6 | 0.59 |
5 | CELL-CYCLE | Combined | RF | 1.76 | 5.7 × 10−3 | 0.59 |
6 | PI3K-AKT | Combined | RF | 1.90 | 8 × 10−5 | 0.60 |
7 | TGF-β | Combined | KNN | 1.73 | 9 × 10−4 | 0.58 |
8 | NOTCH | Combined | Lasso | 2.34 | 3 × 10−7 | 0.62 |
9 | MYC | GPM | Lasso | 1.68 | 1.7 × 10−3 | 0.57 |
10 | RAS | Combined | Lasso | 1.79 | 3.8 × 10−4 | 0.58 |
11 | HIPPO | Combined | KNN | 1.11 | 0.51 | 0.52 |
12∗ | Apoptosis + NOTCH | GPM + Combined | RF | 2.54 | 2.3x10−8 | 0.61 |
∗Boldface indicates the best results. Hyperparameters for above models are provided in Supplementary S1 TableC.