Table 1.
coordinatesa | DHN (Substrate like) | 19NT (TS like) | TS | ||
---|---|---|---|---|---|
X-ray (1) | gas phase opt. (2) | X-ray (6) | gas phase opt. (7) | gas phase opt. (5) | |
Field magnitudeb (MV/cm) | −139.5 | −105.3 | −160.4 | −100.9 | −151.8 |
Feld projectionc (MV/cm) | −127.6 | −83.5 | −141.7 | −76.1 | −144.6 |
%alignedd | 91% | 79% | 88% | 75% | 95% |
Δstabilizatione (kcal mol−1) | 6.6 | reference | 10.7 | reference | / |
C=O…O16 (Å) | 2.53 | / | 2.57 | / | 2.70 |
C=O…O103 (Å) | 2.76 | / | 2.65 | / | 2.48 |
See Table S2 and Figure S3 for complete simulation scheme and results. The number of each entry corresponds to the respective species in Figure 3 and Figure S3.
The electric field magnitude, , is the average of the magnitude of the enzyme’s electric field at the C and O atoms of the bound ligand.
The electric field projected on the carbonyl is calculated by , and also equals · %aligned, where is the magnitude of the enzyme’s field.
The %aligned is calculated by eq 3.
Δstabilization (the stabilization energy gained from C=O distortion) is the difference of the field projection multiplied by the dipole of the carbonyl (1 MV cm−1 D ≃ 0.048 kcal mol−1).