Table 2.
Nucleotide identity of CN/Liaoning25/2018 compared with five PEDV reference strains.
| Subgroup | Representative Strains | GenBank | Identity |
|||
|---|---|---|---|---|---|---|
| Complete genome | ORF1ab gene | S gene | ORF3_E_M_N gene | |||
| GI-a | Virulent CV777 | AF353511 | 97.2 | 98.1 | 93.4 | 96.5 |
| GI-b | Attenuated CV777 | KT323979 | 98.8 a | 99.8 | 93.2 | 99.6 |
| GII-a | AH2012 | KC210145 | 97.7 | 97.8 | 98.7 | 95.6 |
| GII-b | AJ1102 | JX188454 | 97.6 | 97.8 | 97.6 | 96.1 |
| GII-c | OH851 | KJ399978 | 97.2 | 97.8 | 95.5 | 95.8 |
a
Segments of the reference strains sharing the highest similarity to CN/Liaoning25/2018 are shown in bold.