Modern human
PRJEB9586 (Mallick et al. 2016)	Simons diversity genomes
NA (Van Hout et al. 2019)	UK Biobank exomes
Ancient human
PRJEB6622 (Fu et al. 2014)	Ust’-Ishim
PRJEB6272 (Lazaridis et al. 2014)	Loschbour, StuttgartLBK, Motala3, Motala12
PRJNA240906 (Gamba et al. 2014)	NE1, BR2, IR1, KO1, NE6, NE7, CO1, NE5, BR1
PRJEB4604 (Schiffels et al. 2016)	12880A, 12881A, 12883A, 12884A, 15594A-sc-20
PRJEB21878 (Skoglund et al. 2017)	I9028, I9133, I9134
PRJEB11004 (Martiniano et al. 2016)	3DRIF-16, 3DRIF-26, 6DRIF-18, 6DRIF-21, 6DRIF-22, 6DRIF-23, 6DRIF-3, M1489, NO3423
PRJEB24629 (de la Fuente et al. 2018)	IPK12, IPY10
PRJEB27628 (Krzewińska et al. 2018)	chy002, kzb002, kzb005, kzb006, kzb007, kzb008, mur003, mur004, scy009, scy301, scy303
PRJEB13123 (Fu et al. 2016)	Karelia
PRJEB11364 (Jones et al. 2015)	Bichon, Kotias, Satsurblia
PRJEB21940 (Günther et al. 2018)	Sf12, H22, Sf913, Stg001
PRJEB9783 (Günther et al. 2015)	atp002, atp12-1240
PRJNA218466 (Raghavan et al. 2014)	Mal’Ta
PRJEB21037 (Saag et al. 2017)	Kunila1, Ardu2
PRJEB18067 (Jones et al. 2017)	Latvia_HG1, Latvia_HG2, Latvia_HG3, Latvia_MN2
PRJEB11995 (Cassidy et al. 2016)	BA64, RM127, RSK1, RSK2
PRJEB29663 (Wright et al. 2018)	MH8
PRJEB31045 (Sánchez-Quinto et al. 2019)	ans017, prs016, prs002, prs009
PRJNA338374 (Bhattacharya et al. 2018)	Atacama
PRJEB23467 (Valdiosera et al. 2018)	atp002, atp016
PRJEB7618 (Seguin-Orlando et al. 2014)	Kostenki 14
PRJNA284124 (Rasmussen et al. 2015)	Kennewick
PRJNA46213 (Rasmussen et al. 2010)	Saqqaq
PRJNA229448 (Rasmussen et al. 2014)	Anzick-1
PRJEB6943	Cr10-sc, PA38-sc, PA30-sc
PRJEB2830 (Keller et al. 2012)	Ötzi
PRJNA230689 (Olalde et al. 2014)	La Brana
PRJEB6090 (Skoglund et al. 2014)	Gökhem2, Ajvide58
Neanderthal
PRJEB1265 (Slon et al. 2017)	Altai
PRJEB21157 (Prüfer et al. 2017)	Vindija
PRJEB21195 (Prüfer et al. 2017)	Mezmaiskaya1
NA (Mafessoni et al. 2020)	Chagyrskaya
PRJEB21870 (Hajdinjak et al. 2018)	Goyet Q56-1
PRJEB21875 (Hajdinjak et al. 2018)	Les Cottes Z4-1514
PRJEB21881 (Hajdinjak et al. 2018)	Mezmaiskaya2
PRJEB21882 (Hajdinjak et al. 2018)	Vindija 87
PRJEB21883 (Hajdinjak et al. 2018)	Spy 94a
PRJEB2065 (Green et al. 2010)	Vi33.16, Vi33.25, Vi33.26
Denisova
PRJEB3092 (Meyer et al. 2012)	Denisova3
PRJEB20653 (Slon et al. 2017)	Denisova2
Neanderthal/Denisova hybrid
PRJEB24663 (Slon et al. 2018)	Denisova11