Subject	Biology
Specific subject area	Microbial ecology
Type of data	Tables, figures, FASTQ
How data was acquired	High performance sequencing data of the 16S rRNA gene amplicon using Illumina MiSeq sequencing [1].
Data format	Raw and analyzed
Parameters for data collection	Identification of ponds with fish activity and sediment collection.
Description of data collection	Extraction and amplification of bacterial DNA by PCR and sequencing of 16S bacterial rRNA amplicon [2].
Data source location	Lagoons with fish potential located in the Central Andes of Peru, between latitude −11.7808°, longitude −75.2454° and latitude −11.7198, longitude −75.2311 (Fig. 1).
Data accessibility	Data is available in the article.