Table 1.
Software to analyze ISH signal.
| software | source | website | chromogenic/ fluorescent analysis |
download | RRID |
|---|---|---|---|---|---|
| HALO | Indica Labs |
http://www.indicalab.com/products/multiplex-fish/ http://www.indicalab.com/products/sish-dual-cish-quantification/ |
both | ||
| Aperio | Leica | https://www.leicabiosystems.com/digital-pathology/analyze/ish-fish/ | both | ||
| Spotstudio | Advanced Cell Diagnostics | https://acdbio.com/rnascope®-spotstudio-software | chromogenic only | ||
| Imaris | Bitplane | http://www.bitplane.com/imaris | both | SCR_007370 | |
| ImageJ/Fiji | NIH | http://fiji.sc | both | http://fiji.sc/#download | SCR_002285 |
| CellProfiler | Broad Institute | http://cellprofiler.org | both | https://cellprofiler.org/releases/ | SCR_007358 |