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. 2020 Sep 8;15(9):e0238572. doi: 10.1371/journal.pone.0238572

Table 1. Proliferation-relevant sarcoma genes.

Transcriptional profiling of genetically engineered, KRAS-induced mouse rhabdomyosarcomas (RMS) and non-myogenic sarcomas (NMS) identified 141 sarcoma-relevant genes; their function was evaluated using a customized shRBA screen. Sixteen of the 141 sarcoma-relevant genes scored as „hits”in RMS and/ or NMS (p<0,01, q>0,05, at least 3 of 5 shRNAs with FDR< 30%) and are listed here. These 16 hits include 5 potentially druggable targets, i.e. Asns, Cenpe, Crebl2, HAs2 and Ube2c.

Kras; p16p19null RMS Kras; p16p19null NMS
Symbol Cell function Chemical modulation Mean % of ctrl Level p-value q value Mean % of ctrl Level p-value q value
Asns Asparagine synthesis AS5, Asparaginase, Mupirocin 30,16 2 < .0001 0,0058 6,6934 1 < .0001 0,0072
Rbbp8 Cell cycle 56,06 3 0,0022 0,0160 30,7323 2 0,0012 0,0288
Rad54l DNA repair 57,56 3 0,0031 0,0180 40,5093 3 0,0076 0,0421
Ube2c Cell cycle Bortezomib 43,56 3 < .0001 0,0058 38,6873 - 0,0054 0,0389
Cenpe Chromosome stability UA62784, GSK923295A 72,49 - 0,0511 0,0689 39,9054 3 0,0067 0,0402
Has2 Extracellular matrix Latrunculin A 61,76 - 0,0075 0,0335 41,5132 3 0,0088 0,0453
Creb3l2 Transcriptional regulation Sorafenib 62,69 2 0,0090 0,0326 60,2497 - 0,1230 0,1736
Basp1 Transcriptional regulation 45,37 3 0,0002 0,0039 50,8361 - 0,0371 0,0989
Lrrfip1 Transcriptional regulation 54,80 3 0,0017 0,0164 54,4497 - 0,0606 0,1322
Lasp1 Cytoskeletal organization 60,37 3 0,0056 0,0271 58,6252 3 0,1019 0,1706
Pold3 DNA repair 62,96 3 0,0095 0,0290 31,9654 - 0,0015 0,0216
Efhd2 Apoptosis 53,27 - 0,0034 0,0179 46,8886 2 0,0007 0,0252
Myo9b Cytoskeletal organization 67,41 - 0,0445 0,0737 33,5929 2 0,0021 0,0252
Runx1 Transcriptional regulation 64,64 - 0,0455 0,0713 30,6930 3 0,0012 0,0288
Shcbp1 Cell proliferation 71,42 - 0,1118 0,1099 37,7316 3 0,0045 0,0405
Egr2 Transcriptional regulation 74,44 - 0,0689 0,0850 42,9416 3 0,0048 0,0384