Subject | Microbiology |
Specific subject area | Applied Microbiology |
Type of data | Table Figure 16S rDNA illumine sequences |
How data were acquired | Amplicon metasequencing using Illumina HiSeq platform |
Data format | Raw data in FASTQ format Analyzed |
Parameters for data collection | Fecal samples were collected for microbial analysis from adolescents over 15 years old, who signed voluntary informed consent forms. The data collection was approved by the Ethics Committee of Scientific centre for Family Health and Human Reproduction Problems (protocol N6 from 21 December 2015). Adolescents were grouped according to body mass index into three groups: normal body mass (23 persons), obesity (BMI ≥ 95 percentile) (20), and obesity with irritable bowel syndrome (IBS) (10). |
Description of data collection | Total DNA was extracted from stool samples, the V3-V4 variable regions of 16S rDNA were amplified, and paired-end sequenced according to Illumina protocol using Illumine platform. |
Data source location | Institution: Scientific centre for Family Health and Human Reproduction Problems City: Irkutsk Country: Russia |
Data accessibility | Raw data were deposited to NCBI Repository name: SRA Data identification number: BioProject PRJNA604466, BioSamples from SAMN13972309 to SAMN13972361. Direct URL to data: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA604466 |
Related research article | Belkova N.L., Nemchenko U.M., Pogodina A.V., Feranchuk S.I., Romanitsa A.I., Novikova E.A., Rychkova L.V. Composition and Structure of Gut Microbiome in Adolescents with Obesity and Different Breastfeeding Duration. // Bulletin of Experimental Biology and Medicine. 2019. V. 167, No. 6. P. 759–762. Translated from Byulleten’ Eksperimental'noi Biologii i Meditsiny, Vol. 167, No. 6, pp. 717–721. DOI 10.1007/s10517–019–04617–7 |