TABLE 1.
Genome characteristics of the centromeres of Verticillium dahliae strain JR2e
| Chr. | Locus | CenH3 |
AT-rich, position (kb)b | AT content (%)c
|
Repetitive elements |
|||
|---|---|---|---|---|---|---|---|---|
| Position (bp)a | Length (bp) | Chr. | Cen. | No. of repeats (%)d | No. of VdLTRE9 (%)d | |||
| 1 | CEN1 | 2920143–3094179 | 174,037 | 2919–3094 | 45.7 | 77.1 | 50 (99.8) | 27 (70.4) |
| 2 | CEN2 | 520698–672281 | 151,584 | 516–672 | 46.3 | 77.8 | 43 (99.7) | 26 (83.0) |
| 3 | CEN3 | 2374294–2541026 | 166,733 | 2375–2542 | 45.8 | 77.3 | 47 (99.8) | 31 (80.5) |
| 4 | CEN4 | 2884316–3071412 | 187,097 | 2885–3072 | 46.2 | 75.4 | 54 (99.5) | 24 (53.8) |
| 5 | CEN5 | 1868317–2043260 | 174,944 | 1868–2044 | 46.7 | 73.9 | 58 (99.5) | 25 (63.1) |
| 6 | CEN6 | 2166972–2333060 | 166,089 | 2167–2334 | 46.4 | 75.2 | 48 (100) | 31 (62.6) |
| 7 | CEN7 | 1944367–2038091 | 93,725 | 1945–2038 | 44.7 | 76.5 | 32 (95.8) | 14 (47.8) |
| 8 | CEN8 | 1406398–1561664 | 155,267 | 1406–1562 | 47.7 | 77.0 | 37 (100) | 26 (73.9) |
a
Position of CenH3-enriched domains; enriched domains within 10 kb have been merged.
b
Position of AT-rich domains; AT-rich domains within 20 kb have been merged.
c
Average AT content of 1-kb windows of the entire chromosome and the AT-rich domain.
d
Percentage of centromeric region covered.
e
Abbreviations: Chr., chromosome; Cen., centromere.