TABLE 3.

Cell wall-related genes DE in the host (ATCC 52813) and the nonhost (ATCC 11559) during physical interaction with Mycetohabitans sp. B13

Protein ID	Log2 FCa	FDRb	CAZY/ InterPro	Annotationc
Host
308710	0.95	9.18E−03	CE4	Chitin deacetylase**
285170	0.69	8.08E−04	GT15	Alpha-1,2-mannosyltransferase*
202842	1.45	1.77E−07	GT2	Chitin synthase*
211861	0.50	4.47E−03	GH9	Endoglucanase**
284826	1.05	3.90E−05	IPR006597	Extracellular protein SEL-1, homolog of SKT5, activator of chitin synthase in Saccharomyces cerevisiae
237437	1.02	8.69E−04	IPR006597	Extracellular protein SEL-1, homolog of SKT5, activator of chitin synthase in Saccharomyces cerevisiae
226625	1.76	6.06E−08	GT2	Chitin synthase
202463	−0.92	1.73E−03	GH15|CBM21	Glucoamylase**
Nonhost
177895	0.94	5.55E−04	IPR016491	Septin
195250	1.28	4.10E−03	IPR016491	Septin
54483	1.35	1.95E−03	GT48	1,3-Beta-glucan synthase*
224455	1.31	2.10E−04	GT48	1,3-Beta-glucan synthase*
178226	1.27	1.83E−03	GT15	Alpha-1,2-mannosyltransferase*
177931	1.12	3.65E−03	GT15	Alpha-1,2-mannosyltransferase*
241953	1.08	4.29E−03	GT15	Alpha-1,2-mannosyltransferase*
97566	1.90	2.59E−03	CE4	Chitin deacetylase**
180937	1.78	7.78E−06	GH18|CBM19	Chitinase**
221684	1.70	2.61E−05	GH16	None
209732	1.65	6.41E−06	GH20	Hexosaminidase**
241802	1.65	2.30E−06	GH81	Endo-1,3-beta-glucanase**
263075	1.60	1.27E−03	GH16	Xylanase/beta(1,4) glucanase**
204754	1.52	5.01E−04	GT2	Chitin synthase*
261112	1.57	1.31E−07	CE4	Chitin deacetylase**
11846	1.55	1.19E−04	GH18	Chitinase**
81356	1.54	7.78E−06	GH47	Alpha-1,2-mannosidase**
230502	1.53	8.72E−05	GH9	Endoglucanase**
222744	1.45	2.16E−04	GH72|CBM43	Glucanosyltransferase*
198772	1.44	2.42E−04	CE4	Chitin deacetylase**
219382	1.35	4.37E−03	GH3	Beta-glucosidase**
149043	1.33	4.99E−04	GH18	Chitinase**
181330	1.32	9.27E−04	CE4	Chitin deacetylase**
212115	0.83	8.21E−03	CE4	Chitin deacetylase**
258608	−0.97	7.17E−03	GH45|CBM1	Endoglucanase**
207865	−1.41	4.69E−03	GH45|CBM1	Endoglucanase**

^aLog₂ FC, log₂ fold change. Positive log₂ FC values denote upregulated genes, and negative log₂ FC values denote downregulated genes.

^bFDR, false discovery rate.

^cAnnotations obtained though CAZYmes Analysis Toolkit (109) are indicated with an asterisk. Annotations obtained through the mycoCLAP database (110) are indicated by two asterisks. The remaining annotations are from JGI.