TABLE 4.
ROS response genes DE in the host (ATCC 52813) and the nonhost (ATCC 11559) during physical interaction with Mycetohabitans sp. B13
| Protein ID | Log2 FCa | FDRb | IPR ID | Annotationc |
|---|---|---|---|---|
| Host | ||||
| 292375 | 3.99 | 4.43E−04 | IPR002226 | Catalase |
| 237694 | 2.03 | 4.77E−13 | IPR004045 | Glutathione S-transferase |
| 238090 | 1.49 | 1.00E−13 | IPR002226 | Catalase |
| 287063 | 0.88 | 3.09E−03 | IPR002016 | Heme peroxidase, plant/fungal/bacterial |
| 287063 | 0.88 | 3.09E−03 | IPR002207 | Plant ascorbate peroxidase |
| 2966 | −0.63 | 3.40E−03 | IPR008254 | Flavodoxin/nitric oxide synthase |
| 237561 | −0.78 | 3.30E−06 | IPR002007 | Heme peroxidase, animal |
| Nonhost | ||||
| 193785 | 4.04 | 5.96E−05 | IPR001155 | NADH:flavin oxidoreductase/NADH oxidase, yeast OYE2/3 homolog |
| 216648 | 2.27 | 7.56E−16 | IPR004046 | Glutathione S-transferase, C-terminal |
| 223952 | 2.00 | 4.44E−05 | IPR001117 | Multicopper oxidase, type 1 |
| 224787 | 1.55 | 2.23E−04 | IPR001155 | NADH:flavin oxidoreductase/NADH oxidase, yeast OYE2/3 homolog |
| 294344 | 1.24 | 2.69E−05 | IPR015798 | Copper amine oxidase |
| 15570 | 1.20 | 8.81E−03 | IPR001117 | Multicopper oxidase, type 1 |
| 29967 | 0.89 | 1.25E−03 | IPR002007 | Heme peroxidase, animal |
a
Log2 FC, log2 fold change. Positive log2 FC values denote upregulated genes, and negative log2 FC values denote downregulated genes.
b
FDR, false discovery rate.
c
Annotations given were generated by JGI. Homology to yeast OYE2/3 genes was determined by OrthoMCL (111).