Table 5.
The results obtained from docking of Drugs with 6M0J in site 1.
Drugs | S score (kcal/mol) | RMSD (Å) | Bonds
between atoms of compounds and residues of active site 1 of 6M0J |
|||||
---|---|---|---|---|---|---|---|---|
Atom of compound | Atom of receptor | Involved receptor residues | Type of interaction bond | Distance (Å) | E (kcal/mol) | |||
Chloroquine | −6.8442 | 1.9853 | 6-ring | 6-ring | Phe 438 | pi-pi | 3.37 | 0 |
Delapril | −7.5271 | 2.1735 | O-31 | OE2 | Glu 375 | H-donor | 3.01 | −4.5 |
O-25 | NH2 | Arg 514 | H-acceptor | 3.04 | −1.4 | |||
O-26 | ZN | Zn 901 | metallic | 1.96 | −2.1 | |||
Zn-901 | NE2 | His 374 | 2.4 | −3.2 | ||||
NE2 | His 378 | 2.27 | −5.7 | |||||
OE1 | Glu 402 | 2.1 | −5.6 | |||||
NE2 | His 378 | ionic | 2.27 | −11.7 | ||||
OE1 | Glu 402 | 2.1 | −14.4 | |||||
OE2 | Glu 402 | 3.13 | −3.7 | |||||
6-ring | OH | Tyr 515 | Pi-H | 3.38 | −0.9 | |||
6-ring | Tyr 510 | pi-pi | 3.93 | 0 | ||||
Enalapril | −7.8671 | 1.9897 | O-22 | O | Pro 289 | H-donor | 3.39 | −0.8 |
Enalaprilat | −6.9279 | 1.8459 | O-44 6-ring |
NZ | Lys 441 | H-acceptor | 3.16 | −8.4 |
6-ring | Phe 438 | pi-pi | 3.73 | 0 | ||||
Hydroxychloroquine | −7.2272 | 2.1035 | 6-ring | CB | Phe 438 | pi-H | 3.82 | −0.8 |
6-ring | 6-ring | Phe 438 | pi-pi | 3.81 | 0 | |||
Lisinopril | −7.5918 | 1.3368 | N-11 | NE2 | Gln 442 | H-acceptor | 3.18 | −2.8 |
6-ring 6-ring |
CA | Asn 290 | Pi-H | 4.07 | −0.8 | |||
N | Ile 291 | 4.22 | −0.9 | |||||
ORE-1001 | −7.3872 | 1.5557 | Cl | O | Leu 410 | H-donor | 3.49 | −0.8 |
5-ring | CB | Phe 438 | pi-H | 4.43 | −0.7 | |||
6-ring | 6-ring | Phe 438 | pi-pi | 3.37 | 0 | |||
Perindopril | −6.4327 | 2.4655 | N-26 | O | Ile 291 | H-donor | 3.21 | −0.8 |
Piperaquine | −8.6132 | 2.3325 | 6-ring | 6-ring | Phe 438 | pi-pi | 3.35 | 0 |
Quinacrine | −8.2350 | 1.6346 | 6-ring 6-ring | N | Ile 291 | pi-H | 4.81 | −0.6 |
N | Ile 291 | 3.98 | −1.1 | |||||
Quinacrine Mustard | −7.8570 | 1.4398 | Cl-58 | SD | Met 366 | H-donor | 3.74 | −0.4 |
6-ring 6-ring |
N | Ile 291 | pi-H | 3.98 | −1.4 | |||
6-ring | Phe 438 | pi-pi | 3.58 | 0 | ||||
Ramipril | −7.7464 | 1.6166 | O-58 | N | Ile 291 | H-acceptor | 3.47 | −0.8 |
Ramiprilat | −6.9943 | 2.4607 | O-49 | Zn | Zn 901 | metallic | 2.01 | −3.9 |
Zn-901 | NE2 | His 374 | 2.4 | −3.2 | ||||
NE2 | His 378 | 2.27 | −5.7 | |||||
OE1 | Glu 402 | 2.1 | −5.6 | |||||
NE2 | His 378 | ionic | 2.27 | −11.7 | ||||
OE1 | Glu 402 | 2.1 | −14.4 | |||||
OE2 | Glu 402 | 3.13 | −3.7 |