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. 2020 Aug 5:1–17. doi: 10.1080/07391102.2020.1803967

Table 6.

The results obtained from docking of Drugs with 6M0J in site 2.

Drugs S score (kcal/mol) RMSD (Å) Bonds between atoms of compounds and residues of active site 2 of 6M0J
Atom of compound Atom of receptor Involved receptor residues Type of interaction bond Distance (Å) E (kcal/mol)
Chloroquine −5.4920 2.3627 C-45 5-ring His 401 H-pi 4.25 −0.9
Delapril -8.1604 1.5603 O-26 ZN Zn 901 metallic 2.13 −3.6
Zn-901 NE2 His 374 2.4 −3.2
His 378 2.27 −5.7
OE1 Glu 402 2.1 −5.6
NE2 His 378 ionic 2.27 −11.7
OE1 Glu 402 2.1 −14.4
OE2 Glu 402 3.13 −3.7
Enalapril −6.7570 2.6763 O-14 ZN Zn 901 metallic 2 −2.5
Zn-901 NE2 His 374 2.4 −3.2
NE2 His 378 2.27 −5.7
OE1 Glu 402 2.1 −5.6
NE2 His 378 ionic 2.27 −11.7
OE1 Glu 402 2.1 −14.4
OE2 Glu 402 3.13 −3.7
C-52 5-ring His 378 H-pi 3.88 −1
Hydroxychloroquine −6.3125 1.8513 O-2 OE2 Glu 375 H-donor 2.86 −1.9
O-2 ZN Zn 901 metallic 2 −2.6
Zn-901 NE2 His 374 2.4 −3.2
NE2 His 378 2.27 −5.7
OE1 Glu 402 2.1 −5.6
NE2 His 378 ionic 2.27 −11.7
OE1 Glu 402 2.1 −14.4
OE2 Glu 402 3.13 −3.7
C-47 5-ring His 378 H-pi 4.12 −0.6
Lisinopril −6.6966 1.9981 O-5 O H2O 1004 H-donor 2.97 −2
O-1 ZN Zn 901 metallic 2.06 −2.3
Zn-901 NE2 His 374 2.4 −3.2
NE2 His 378 2.27 −5.7
OE1 Glu 402 2.1 −5.6
NE2 His 378 ionic 2.27 −11.7
OE1 Glu 402 2.1 −14.4
OE2 Glu 402 3.13 −3.7
6-ring N Ile 291 pi-H 3.98 −1.1
ORE-1001 −6.2755 2.5319 N-6 OH Tyr 515 H-acceptor 3.09 −2.1
O-25 ZN Zn 901 metallic 2.09 −2.3
O-31 ZN Zn 901 2.31 −0.9
Zn-901 NE2 His 374 2.4 −3.2
NE2 His 378 2.27 −5.7
OE1 Glu 402 2.1 −5.6
NE2 His 378 ionic 2.27 −11.7
OE1 Glu 402 2.1 −14.4
OE2 Glu 402 3.13 −3.7
Perindopril −6.7968 2.2965 O-23 O Glu 398 H-donor 2.84 −3.1
N-26 OE1 Glu 402 3.11 −1.4
C-46 OE2 Glu 375 3.49 −0.6
O-16 O H2O 1033 H-acceptor 2.86 −1.9
O-25 NH2 Arg 514 2.91 −1.9
O-42 ZN Zn 901 metallic 1.97 −2.9
Zn-901 NE2 His 374 2.4 −3.2
NE2 His 378 2.27 −5.7
OE1 Glu 402 2.1 −5.6
NE2 His 378 ionic 2.27 −11.7
OE1 Glu 402 2.1 −14.4
OE2 Glu 402 3.13 −3.7
Ramipril −7.6305 2.4853 O-53 ZN Zn 901 metallic 2.13 −1.7
O-58 ZN Zn 901 2.44 −1.4
Zn-901 NE2 His 374 2.4 −3.2
NE2 His 378 2.27 −5.7
OE1 Glu 402 2.1 −5.6
NE2 His 378 ionic 2.27 −11.7
OE1 Glu 402 2.1 −14.4
OE2 Glu 402 3.13 −3.7
Ramiprilat −7.1864 1.7252 O-45 Zn Zn 901 metallic 1.94 −2.9
Zn-901 NE2 His 374 2.4 −3.2
NE2 His 378 2.27 −5.7
OE1 Glu 402 2.1 −5.6
NE2 His 378 ionic 2.27 −11.7
OE1 Glu 402 2.1 −14.4
OE2 Glu 402 3.13 −3.7
Trandolapril −7.1160 1.9818 O-1 O H2O 1030 H-acceptor 3.04 −1
O-4 ZN Zn 901 metallic 2.07 −3.8
Zn-901 NE2 His 374 2.4 −3.2
NE2 His 378 2.27 −5.7
OE1 Glu 402 2.1 −5.6
NE2 His 378 ionic 2.27 −11.7
OE1 Glu 402 2.1 −14.4
OE2 Glu 402 3.13 −3.7
6-ring CA Glu 398 pi-H 3.63 −0.6