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. 2020 Aug 18:1–7. doi: 10.1080/07391102.2020.1809522

Table 4.

Docking results of the lead hits with SARS CoV-2 main protease.

S.no. Molecules Binding energy (kcal/mol) Interaction energy (kcal/mol) Inhibition constant (Ki value) No. of H-bonds Residues involved in H-bonding
1 Sesamin −8.93 −10.21 285.02nM 4 Ser144, Cys145, Gln189, Gln192
2 Galangin −6.47 −9.24 18.23μM 3 Glu166 (1), Gln192(2)
3 Ellagic acid −7.9 −11.17 1.62μM 5 His164, Cys145, Glu166, Arg188, Thr190
4 Capsaicin −7.16 −11.715 5.61μM 4 Glu166, Gln189, Thr190, Gln192
5 Epicatechin −6.68 −10.631 12.77μM 8 Leu141, Gly143, Cys145, His163, His164, Glu166, Gln189(2)
6 Carmofur −5.93 −7.564 45.32 μM 4 Glu166, Arg188, Thr190, Gln192
(significant interaction with Cys145)