TABLE 5.
Summary of ability of 16S rRNA gene target to identify clinically relevant Actinomycetaceae, Corynebacteriaceae, Micrococcaceae, Microbacteriaceae, Paenibacillaceae, Cellulomonadaceae, Listeriaceae, Intrasporangiaceae (Dermatobactereaceae and Dermatophilaceae), Pseudonocardiaceae, Bacillaceae, Erysipelothrichaceae, Promicromonosporaceae, Dermabacteriaceae, and Brevibacteriaceae
Genus | No. of sequences in the genus MSAa | Total no. of tested positions | No. of identical positions | No. of divergent positions | % Identity |
---|---|---|---|---|---|
Arcanobacterium | 8 | 1,356 | 1,235 | 121 | 91.08 |
Arthrobacter | 41 | 1,362 | 1,079 | 283 | 79.22 |
Bacillus | 217 | 1,419 | 710 | 709 | 50.04 |
Geobacillus | 11 | 1,500 | 1,404 | 96 | 93.60 |
Brachybacterium | 19 | 1,397 | 1,247 | 150 | 89.26 |
Brevibacterium | 28 | 1,406 | 978 | 428 | 69.56 |
Corynebacterium | 93 | 1,399 | 944 | 455 | 67.48 |
Cellulosimicrobium | 5 | 1,442 | 1,377 | 65 | 95.49 |
Curtobacterium | 7 | 1,484 | 1,094 | 390 | 73.72 |
Erysipelothrix | 4 | 1,512 | 1,386 | 126 | 91.67 |
Exiguobacterium | 16 | 1,370 | 1,217 | 153 | 88.83 |
Geobacillus | 11 | 1,500 | 1,404 | 96 | 93.60 |
Knoellia | 5 | 1,447 | 1,395 | 52 | 96.41 |
Janibacter | 8 | 1,381 | 1,306 | 75 | 94.57 |
Leifsonia | 11 | 1,409 | 1,277 | 132 | 90.63 |
Listeria | 12 | 1,170 | 1,070 | 100 | 91.45 |
Microbacterium | 91 | 1,277 | 1,004 | 273 | 78.62 |
Oerskovia | 4 | 1,467 | 1,460 | 7 | 99.52 |
Paraoerskovia | 2 | 1,477 | 1,452 | 25 | 98.31 |
Paenibacillus | 187 | 1,310 | 814 | 496 | 62.14 |
Pseudoclavibacter | 5 | 1,418 | 1,274 | 144 | 89.84 |
Kocuria | 20 | 1,429 | 1,212 | 217 | 84.81 |
Trueperella | 4 | 1,446 | 1,361 | 85 | 94.12 |
MSA, multisequence alignment.