TABLE 7.

Summary of ability of 16S rRNA gene target to identify clinically relevant Pseudomonaceae, Burkholderiaceae, Ralstoniaceae, Moraxellaceae, Xanthomonadaceae, Comamonadaceae, Alcaligenaceae, Caulobacteraceae, Acetobacteraceae, Methylobacteriaceae, Neisseriaceae, Flavobacterium, Rhizobiaceae, Rhodobacteriaceae, Flavobactereaceae, Rhodospirillaceae, Brucellaceae, Sphingobacteriaceae, and Legionellaceae

Genus	No. of sequences in the genus MSAa	Total no. of tested positions	No. of identical positions	No. of divergent positions	% Identity
Pseudomonas	171	1,394	922	472	66.14
Ralstonia	6	1,546	1,472	74	95.21
Burkholderia	27	1,484	1,427	57	96.16
Acinetobacter	47	1,450	1,254	196	86.48
Stenotrophomonas	13	1,446	1,340	106	92.67
Acidovorax	15	1,434	1,341	93	93.51
Achromobacter	19	1,405	1,345	60	95.73
Alcaligenes	4	1,470	1,429	41	97.21
Advenella	5	1,431	1,359	72	94.97
Paenalcaligenes	2	1,514	1,375	139	90.82
Kerstersia	2	1,460	1,435	25	98.29
Brevundimonas	26	1,373	1,181	192	86.02
Comamonas	19	1,436	1,229	207	85.58
Cupriavidus	17	1,441	1,339	102	92.92
Delftia	5	1,496	1,340	156	89.57
Asaia	7	1,397	1,378	19	98.64
Methylobacterium	33	1,394	1,173	221	84.15
Roseomonas	26	1,390	1,104	286	79.42
Neisseria	20	1,325	1,168	157	88.15
Bergeyella	0	0
Weeksella	2	1,482	1,457	25	98.31
Myroides	8	1,420	1,245	175	87.68
Legionella	51	1,315	969	346	73.69
Chryseobacterium	93	1,379	1,025	354	74.33
Elizabethkingia	3	1,521	1,492	29	98.09
Empedobacter	2	1,470	1,435	35	97.62
Rhizobium	66	1,504	966	538	64.23
Bordetella	14	1,456	1,395	61	95.81
Oligella	2	1,488	1,441	47	96.84
Haematobacter	2	1,388	1,387	1	99.93
Agrobacterium	6	1,377	1,319	58	95.79
Moraxella	15	1,431	1,193	238	83.37
Paracoccus	49	1,347	1,064	283	78.99
Psychrobacter	34	1,401	1,239	162	88.44
Ochrobactrum	17	1,393	1,219	174	87.51
Sphingobacterium	37	1,418	991	427	69.89
Pannonibacter	2	1,406	1,378	28	98.01
Brucella	7	1,406	1,397	9	99.36
Pseudochrobactrum	4	1,386	1,376	10	99.28

^aMSA, multisequence alignment.