KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Arc antibody (rabbit) | Synaptic Systems | Cat# 156003 |
Fos antibody (rabbit) | Synaptic Systems | Cat# 226003 |
GFP antibody (chicken) | Aves Labs | Cat# 1020 |
Donkey anti-chicken Alexa 488 antibody | Jackson Immunoresearch | Cat# AB_2340375 |
Donkey anti-rabbit Alexa 568 antibody | ThermoFisher | Cat# A10042 |
Bacterial and Virus Strains | ||
AAV1-Syn-GCaMP6f-WPRE-SV40 | Penn vector core | Cat# 37087 |
AAV1-CaMKII-GCaMP6f-WPRE-SV40 | Penn vector core | Cat# 100834 |
AAV1-Syn-FLEX-GCaMP6f-WPRE-SV40 | Penn vector core | Cat# 100833 |
AAV5-ESARE-ERT2-CreERT2-PEST | Kim et al., 2017 | N/A |
AAV2-EF1a-DIO-hChR2-EYPP | UNC vector core | N/A |
AAV2-EF1a-DIO-EYPP | UNC vector core | N/A |
Experimental Models: Organisms/Strains | ||
Mouse: C57BL/6J | Jackson Laboratories | Stock 000664, RRID: IMSR_JAX:000664 |
Mouse: Slc32a1tm2(cre)Lowl/J (Vgat-ires-cre) | Jackson Laboratories | Stock 016962, RRID: IMSR_JAX:016962 |
Software and Algorithms | ||
MATLAB | Mathworks | https://www.mathworks.com/products/matlab.html |
ImageJ | NIH | https://imagej.nih.gov/ij/index.html; RRID: SCR_003070 |
DeepLabCut | Mathis et al., 2018 | mousemotorlab.org/deeplabcut |
Miniscope Controller | UCLA Miniscope | https://github.com/daharoni/Miniscope_DAQ_Software |
NoRMCorre | Pnevmatikakis and Giovannucci, 2017 | https://github.com/flatironinstitute/NoRMCorre |
CellSort | Mukamel et al., 2009 | https://github.com/mukamel-lab/CellSort |
CellProfiler | McQuin et al., 2018 | https://cellprofiler.org |
Other | ||
Microendoscope | UCLA Miniscope | http://miniscope.org |
Nanoinjector | World Precision Instruments | Cat# Nanoliter 2000 |
Superfrost Plus slides | Fisher Scientific | Cat# 22-037-246 |