Table 2.
Pair wise percent identities of NYSV (NAR-1: JQ686724), NDV (NDV1R: MK572806) and CEVA (NBRI1: KF430816) sequences under study at nucleotide (nt) and its amino acid (aa) with respective sequences of other potyviruses available in GenBank using DiAlign tool
| Gene Bank Accession | Virus | Isolate | Location | Percent identity nt (aa) |
|---|---|---|---|---|
| Sequence identities of NYSV NAR-1 (JQ686724) with other potyvirus isolates | ||||
| KM066972 | NYSV | NAR-2 | India | 91 (90) |
| AJ311372 | NYSV | Zhangzhou | China | 87 (89) |
| LC158481 | NYSV | NaKM1-CL7 | Japan | 86 (89) |
| LC158491 | NYSV | NsN14-CL6 | Japan | 86 (89) |
| LC158490 | NYSV | NaN14-CL2 | Japan | 86 (89) |
| LC158449 | NLSYV | NaF1-CL4 | Japan | 58 (68) |
| AJ493579 | NLSYV | Hangzhou 2 | China | 57 (69) |
| EU887015 | NLSYV | – | UK | 54 (67) |
| DQ991145 | INP | Lucknow | India | 32 (44) |
| EU888298 | INP | Lucknow 2 | India | 77 (85) |
| AJ493580 | OMV | Hangzhou | China | 34 (49) |
| AB027009 | JYMV | J2 | Japan | 51 (53) |
| Sequence identities of NDV NBRI-NDV1 (MK572806) with other potyvirus isolates | ||||
| LC158497 | NDV | NaKM9-CL5 | Japan | 94 (96) |
| LC158500 | NDV | NaSG8-CL3 | Japan | 94 (96) |
| EU200456 | NDV | NV-3 | China | 95 (97) |
| LC158506 | NDV | NaN14-CL8 | Japan | 94 (97) |
| LC158495 | NDV | NaF1-CL16 | Japan | 95 (96) |
| LC158498 | NDV | NaKM9-CL18 | Japan | 94 (96) |
| LC158449 | NLSYV | NaF1-CL4 | Japan | 37 (53) |
| AJ493579 | NLSYV | Hangzhou 2 | China | 38 (54) |
| EU887015 | NLSYV | – | UK | 38 (52) |
| DQ991145 | INP | Lucknow | India | 96 (97) |
| EU888298 | INP | Lucknow 2 | India | 35 (50) |
| AJ493580 | OMV | Hangzhou | China | 38 (49) |
| AB027009 | JYMV | J2 | Japan | 48 (51) |
| Sequence identities of CEVA NBRI-1 (KF430816) with other potyvirus isolates | ||||
| KF430815 | CEVA | NBRI-2 | India | 75 (80) |
| KM066973 | CEVA | NBRI-3 | India | 94 (97) |
| KM066974 | CEVA | NBRI-4 | India | 94 (98) |
| DQ417604 | CEVA | – | New Zealand | 97 (98) |
| LC158493 | CEVA | NaN19-CL3 | Japan | 78 (89) |
| GU812282 | CEVA | WA-1 | Australia | 80 (92) |
| FJ032248 | CEVA | – | UK | 77 (86) |
| GU812283 | CEVA | WA-2 | Australia | 79 (92) |
| LC158449 | NLSYV | NaF1-CL4 | Japan | 39 (54) |
| AJ493579 | NLSYV | Hangzhou 2 | China | 37 (53) |
| EU887015 | NLSYV | – | UK | 37 (52) |
| DQ991145 | INP | Lucknow | India | 57 (70) |
| EU888298 | INP | Lucknow 2 | India | 35 (51) |
| AJ493580 | OrMV | Hangzhou | China | 35 (53) |
| AB027009 | JYMV | J2 | Japan | 45 (50) |
NYSV: narcissus yellow stripe virus, NLSYV: narcissus late season yellows virus, CEVA: cyrtanthus elatus virus A, INP: Indian narcissus virus, JYMV: Japanese yam mosaic virus, NDV: narcissus degeneration virus, OrMV: ornithogalum mosaic virus