Table 1.

Number of segregating SNPs and distribution of minor allele frequencies (MAF) across data sets after filtering for missing rate > 50% and MAF ≤ 0.1%.

	Accessions	# of SNPs	SNPs with MAF ≥ 1%	SNPs with MAF ≥ 5%	SilicoDArT presence/absence
Hexaploid	56,342	85,531	50,068	28,078	26,507
Tetraploid	18,946	45,376	38,935	25,084	26,526
CWRs	3903	55,739	51,626	39,907	61,505