Table 1. List of mitochondrial and chloroplast genome sequence of Allium species.
Species | Genome | Platform | Length (bp) | GC % | References |
---|---|---|---|---|---|
Allium cepa | Mitochondria | NextSeq500 | 316,363 | N.A. | Kim et al. (2016) |
Allium cepa | Mitochondria | NextSeq 500 | 316,363 and 339,180 | N.A. | Kim, Yang & Kim (2019) |
Allium cepa | Mitochondria | GS FLX | 316288 | 45.3 | Tsujimura et al. (2019) |
Allium cepa | chloroplast | 454 FLX | 153 538 and 153 355 | 36.8 | Von Kohn, Kiełkowska & Havey (2013) |
Allium cepa | Chloroplast | HiSeq2000 | 153,529, 153,440, and 153,568 | N.A. | Kim et al. (2015) |
Allium victorialis |
Chloroplast | HiSeq2000 | 154,074 | 36.48 | Lee et al. (2017) |
Allium prattii | Chloroplast | Hiseq2000 | 154,482 | 37.02 | Jin et al. (2018) |
Allium obliquum | Chloroplast | HiSeq 1500 | 152,387 | 36.8 | Filyushin et al. (2018) |
Allium sativum | Chloroplast | HiSeq 1500 | 153,172 | N.A. | Filyushin et al. (2016) |
Allium fistulosum |
Chloroplast | HiSeq 2500 | 153,164 | 36.8 | Yusupov et al. (2019) |
Allium monanthum |
Chloroplast | Hiseq 2500 | 154,804 | 37 | Xie et al. (2019a); Xie et al. (2019b) |
A. chrysanthum | Chloroplast | Hiseq 2500 | 153,621 | 36.8 | Xie et al. (2019a); Xie et al. (2019b) |
A. rude | Chloroplast | Hiseq 2500 | 153,697 | 36.7 | Xie et al. (2019a); Xie et al. (2019b) |
A. xichuanense | Chloroplast | Hiseq 2500 | 153,673 | 36.7 | Xie et al. (2019a); Xie et al. (2019b) |
A. chrysocephalum, | Chloroplast | Hiseq 2500 | 153,710 | 36.8 | Xie et al. (2019a); Xie et al. (2019b) |
A. maowenense, | Chloroplast | Hiseq 2500 | 153,608 | 36.8 | Xie et al. (2019a); Xie et al. (2019b) |
A. herderianum | Chloroplast | Hiseq 2500 | 153,605 | 36.8 | Xie et al. (2019a); Xie et al. (2019b) |
A. fistulosum | Chloroplast | HiSeq 4000 | 153,162 | 36.8 | Huo et al. (2019) |
A. tuberosum | Chloroplast | HiSeq 4000 | 154,056 | 36.9 | Huo et al. (2019) |
A. sativum | Chloroplast | HiSeq 4000 | 153,189 | 36.7 | Huo et al. (2019) |
A. cepa | Chloroplast | HiSeq 4000 | 153,586 | 36.8 | Huo et al. (2019) |
Allium ovalifolium |
Chloroplast | HiSeq 4000 | 153,635 | 37 | Sun et al. (2019) |