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. 2020 Sep 10;8:e9920. doi: 10.7717/peerj.9920

Table 5. R packages used and the optimal model parameters given.

Method Parameters Best parameter setting R packages
Support vector machine sigma 0.664667494 kernlab 0.9-29
C 11.07262251
C5.0 winnow FALSE C50 0.1.3
trials 43
Deep neural network hidden 200 h2o 3.30.0.1
input_dropout_ratio 0
activation Maxout
eXtreme gradient boosting nrounds 154 xgboost 1.0.0.2
max_depth 10
eta 0.745922343
gamma 3.194824195
colsample_bytree 0.945590117
min_child_weight 3.35705624
subsample 0.802348509
Random Forest mtry 2 randomForest 4.6-14