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. 2020 Sep 14;25(1):461–471. doi: 10.1007/s11030-020-10140-z

Table 1.

Molecular docking scores and binding features for compound 3a–g and Darunavir with SARS-CoV-2 main protease (Mpro)

No. Compound Docking score (kcal/mol) Binding features (hydrogen bond length in Å
1 3a − 8.28 ARG188 (2.18 Å), MET165 (2.63 Å), HIS164 (2.14 Å), GLU166 (2.17 Å, 2.79 Å)
2 3b − 8.14 ARG188 (2.81 Å), GLN192 (2.37 Å), THR190 (2.09 Å), GLU166 (2.03 Å)
3 3c − 7.05 ARG188 (1.82 Å), THR190 (2.60 Å) GLN192 (1.93 Å), GLU166 (1.82 Å, 1.96 Å)
4 3d − 8.30 GLU166 (2.05 Å), ARG 188 (1.80 Å), THR190 (2.08 Å), GLN192 (2.38 Å)
5 3e − 8.63 THR190 (2.1 Å), GLN192 (2.38 Å), ARG188 (1.79 Å), GLU166 (2.08 Å)
6 3f − 7.72 GLN189 (1.94 Å), GLU166 (2.01 Å, 2.33 Å)
7 3g − 7.38 GLU166 (2.82 Å)
8 Darunavir − 8.19 GLU166 (1.94 Å, 2.88 Å), LEU167 (1.96 Å)