Table 3.
Tp1 and Tp2 epitopes detected from Rwanda field samples in this study
| Gene | Epitope variant | |||||
|---|---|---|---|---|---|---|
| Tp1 | CTL 1 | |||||
| VGYPKVKEEMI | ||||||
| Tp2 | CTL 1 | CTL 2 | CTL 3 | CTL 4 | CTL 5 | CTL 6 |
| SDDELKKLGMV (RW18) | DGFDRNTLF (RW 19) | KSSHGMGKIGR (RW 18) | FAQSIVCVL (RW 9) | QSLVCVLVK (RW 13) | KPDIPNPCKW (RW 18) | |
| TEEELKKMGMV (RW3, 8) | DGSDRNTLF (RW 1) | ISSHGMGKVGK (RW 19) | FAQSLMCVI (RW 5, 18) | QSIVCVLMK (RW 9) | ITDIPNPCKW (RW 5) | |
| SDEELGYLGMV (RW 5) | EGFDKDTLF (RW 5, 18) | LSSHGMGKVGK (RW 1) | FAQSLMCVS (RW 19) | QSLMCVSMQ (RW 19) | VNDIPNPCKW (RW 3, 8) | |
| TEDELKKMGMV (RW 16) | EGFDKEKLF (RW 3, 16, 8) | KSSKSMGIVGR (RW 3, 8) | FVQSIMCVI (RW 3, 8) | QSLMCVIHK (RW 18) | VTYIPNPCKW (RW 16) | |
| SHEELDTLGML (RW 1) | KSSQSMGIVGR (RW 5, 16) | FVQSLMCVI (RW 16) | QSLMCVINK (RW 5, 16) | KTSVPNPCDW (RW 1) | ||
| SDEELNKLGMV (RW 19) | LTSHGMGKIGR (RW 4, 7, 10, 11, 12, 15) | FAQSIMCVL (RW 1) | QSIMCVINK (RW 3, 8) | |||
| SDDELDTLGLL (RW 11) | LAASIKCVS (RW 4, 10, 12, 7, 15) | QSIMCVLMK (RW 1) | ||||
| SDNELDTLGLL (RW 4, 7, 10, 12) | LAASIMCVS (RW 11) | ASIKCVSHH (RW 4, 10, 12, 7, 15) | ||||
| SDNELDTLGML (RW15) | ASIMCVSHH (RW 11) | |||||
Notes: Polymorphic amino acids are given in bold and the sample ID for each sample is given in parentheses