Table 1.
The significant SNPLDB loci associated with three yield-related traits in upland cotton
| Traits | Locus | Chr. | Position | -log10(P) | PVE(%) | Common environments a |
|---|---|---|---|---|---|---|
| BN | LDB_10_108252822 | A10 | 108,252,822 | 16.46 | 0.58 | E2(7.68) |
| LDB_8_80957905_80958114 | A08 | 80,957,905 | 9.87 | 0.97 | E2(3.30) | |
| LDB_9_38930641 | A09 | 38,930,641 | 9.52 | 0.51 | E2(2.58) | |
| LDB_18_53807715 | D05 | 53,807,715 | 8.38 | 0.37 | E3(2.32) | |
| LDB_3_42046528_42046540 | A03 | 42,046,528 | 6.52 | E2(4.92) | ||
| LDB_16_4143574 | D03 | 4,143,574 | 5.94 | 0.38 | E2(4.39) | |
| LDB_5_32745305 | A05 | 32,745,305 | 2.80 | E1(3.07) | ||
| LDB_5_30624560 | A05 | 30,624,560 | 1.84 | 0.22 | E2(5.03) | |
| BW | LDB_25_61293136b | D12 | 61,293,136 | 28.02 | 1.05 | E1(5.75), E2(7.39), E4(9.79) |
| LDB_7_11434307 | A07 | 11,434,307 | 19.97 | 3.12 | E3(13.44) | |
| LDB_18_60784,945 | D05 | 60,784,945 | 19.01 | 2.68 | E1(4.96) | |
| LDB_8_117999939 | A08 | 117,999,939 | 18.24 | 0.97 | E3(9.25) | |
| LDB_24_62501704_62501749 | D11 | 62,501,704 | 14.84 | 0.56 | E1(6.03) | |
| LDB_18_62137879 | D05 | 62,137,879 | 14.07 | 1.31 | E4(10.43) | |
| LDB_1_27714781 | A01 | 27,714,781 | 13.53 | 2.33 | E1(1.71) | |
| LDB_23_7162905 | D10 | 7,162,905 | 12.59 | 0.58 | E4(3.13) | |
| LDB_3_101231660 | A03 | 101,231,660 | 8.52 | 0.20 | E3(11.57) | |
| LDB_5_2524535 | A05 | 2,524,535 | 7.65 | 1.00 | E1(1.69) | |
| LDB_15_21962239 | D02 | 21,962,239 | 2.02 | E4(2.61) | ||
| LDB_13_31802375 | A13 | 31,802,375 | 1.31 | E1(8.65) | ||
| LP | LDB_2_98957055_98957100b | A02 | 98,957,055 | 46.97 | 0.98 | E3(21.27), E4(17.27) |
| LDB_20_52488458b | D07 | 52,488,458 | 40.68 | 5.09 | E2(10.18), E3(12.10) | |
| LDB_6_81838215_81856977 | A06 | 81,838,215 | 39.14 | 3.67 | E4(13.50) | |
| LDB_19_62926589b | D06 | 62,926,589 | 29.91 | 2.60 | E2(14.57), E3(4.25), | |
| LDB_15_33683466_33683486b | D02 | 33,683,466 | 22.99 | 0.19 | E3(8.76), E4(8.64) | |
| LDB_6_87041656_87041922b | A06 | 87,041,656 | 21.47 | 2.01 | E1(4.66), E2(3.48) | |
| LDB_22_5519816_5520088 | D09 | 5,519,816 | 17.17 | 2.12 | E3(10.04) | |
| LDB_5_6292927 | A05 | 6,292,927 | 16.95 | 1.20 | E4(17.58) | |
| LDB_13_14883849_14884035 | A13 | 14,883,849 | 6.83 | 0.35 | E2(7.38) | |
| LDB_15_6072794 | D02 | 6,072,794 | 6.01 | 0.77 | E3(2.25) | |
| LDB_15_58321721 | D02 | 58,321,721 | 3.90 | E1(1.66) | ||
| LDB_12_92891416_92891433 | A12 | 92,891,416 | 1.61 | 0.08 | E1(2.93) |
a Figures in brackets denote -log10(P) values in the planting environments. b labels the six stable SNPLDB loci
BN Boll number, BW Boll weight, LP Lint percentage, Chr. Chromosome, PVE Phenotypic variation explanation