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. 2020 Sep 11;21:236. doi: 10.1186/s13059-020-02125-w

Table 3.

Comparison of results before and after conditional association analysis. PP posterior probability

Scenario PP ≥0.9 PP ≥0.8
Before accounting for LD After accounting for LD Before accounting for LD After accounting for LD
True estFDR Power True estFDR Power True estFDR Power True estFDR Power
FDR (%) (%) (%) FDR (%) (%) (%) FDR (%) (%) (%) FDR (%) (%) (%)
4a 5.1 2.5 71.3 4.1 4.7 70.3 8.7 4.6 82.8 6.4 8.6 80.8
4b 3.8 2.4 67.4 2.9 5.6 65.7 7.0 4.6 79.2 4.7 10.1 75.9
4c 7.6 2.7 76.4 6.9 3.4 76.3 13.6 5.0 88.5 11.8 7.0 88.0