Table 1.
List of samples in the study
| ID | Description | Replicate # |
|---|---|---|
| iPSC_1 | Small molecule-driven differentiation on day 0 (iPSC) | 1 |
| iPSC_2 | Small molecule-driven differentiation on day 0 (iPSC) | 2 |
| iPSC_3 | Small molecule-driven differentiation on day 0 (iPSC) | 3 |
| DE_SM_1 | Small molecule-driven differentiation on day 2 (definitive endoderm) | 1 |
| DE_SM_2 | Small molecule-driven differentiation on day 2 (definitive endoderm) | 2 |
| DE_SM_3 | Small molecule-driven differentiation on day 2 (definitive endoderm) | 3 |
| SM_D04_1 | Small molecule-driven differentiation on day 4 | 1 |
| SM_D04_2 | Small molecule-driven differentiation on day 4 | 2 |
| SM_D04_3 | Small molecule-driven differentiation on day 4 | 3 |
| HP_SM_1 | Small molecule-driven differentiation on day 7 (hepatic progenitor) | 1 |
| HP_SM_2 | Small molecule-driven differentiation on day 7 (hepatic progenitor) | 2 |
| HP_SM_3 | Small molecule-driven differentiation on day 7 (hepatic progenitor) | 3 |
| SM_D12_1 | Small molecule-driven differentiation on day 12 | 1 |
| SM_D12_2 | Small molecule-driven differentiation on day 12 | 2 |
| SM_D12_3 | Small molecule-driven differentiation on day 12 | 3 |
| SM_D14_1 | Small molecule-driven differentiation on day 14 | 1 |
| SM_D14_2 | Small molecule-driven differentiation on day 14 | 2 |
| SM_D14_3 | Small molecule-driven differentiation on day 14 | 3 |
| HLC_SM_D17_1 | Small molecule-driven differentiation on day 17 (hepatocyte-like cell) | 1 |
| HLC_SM_D17_2 | Small molecule-driven differentiation on day 17 (hepatocyte-like cell) | 2 |
| HLC_SM_D17_3 | Small molecule-driven differentiation on day 17 (hepatocyte-like cell) | 3 |
| HLC_SM_D24_1 | Small molecule-driven differentiation on day 24 (hepatocyte-like cell) | 1 |
| HLC_SM_D24_2 | Small molecule-driven differentiation on day 24 (hepatocyte-like cell) | 2 |
| HLC_SM_D24_3 | Small molecule-driven differentiation on day 24 (hepatocyte-like cell) | 3 |
| DE_GF_1 | Growth factor-driven differentiation on day 7 (definitive endoderm) | 1 |
| DE_GF_2 | Growth factor-driven differentiation on day 7 (definitive endoderm) | 2 |
| DE_GF_3 | Growth factor-driven differentiation on day 7 (definitive endoderm) | 3 |
| HP_GF _1 | Growth factor-driven differentiation on day 14 (hepatic progenitor) | 1 |
| HP_GF_ 2 | Growth factor-driven differentiation on day 14 (hepatic progenitor) | 2 |
| HP_GF_ 3 | Growth factor-driven differentiation on day 14 (hepatic progenitor) | 3 |
| HLC_GF _1 | Growth factor-driven differentiation on day 23 (hepatocyte-like cell) | 1 |
| HLC_GF _2 | Growth factor-driven differentiation on day 23 (hepatocyte-like cell) | 2 |
| HLC_GF _3 | Growth factor-driven differentiation on day 23 (hepatocyte-like cell) | 3 |
| HLC_iCell_1 | iCell hepatocytes from FCDI | 1 |
| HLC_iCell_2 | iCell hepatocytes from FCDI | 2 |
| Liver_A_1 | Adult liver | 1 |
| Liver_A_2 | Adult liver | 2 |
| Liver_F_1 | Fetal liver | 1 |
| Liver_F_2 | Fetal liver | 2 |
| PHH_1 | Primary human hepatocytes | 1 |
| PHH_2 | Primary human hepatocytes | 2 |
| PHH_3 | Primary human hepatocytes | 3 |
| HLC_Wruck | Reference dataset (GSM3236134) | 1 |
| HLC_Yang_1 | Reference dataset (GSM1633257) | 1 |
| HLC_Yang_2 | Reference dataset (GSM1633258) | 1 |