Table 1.
Conditional IOPcc SNP Results and Replication
| UK Biobank | EPIC-Norfolk | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP | Pos | Locus | A1 | Info | Freq | Beta | SE | P Value | N | Info | Freq | Beta | SE | P Value |
| rs2107482 | 3282064 | MXRA5 | G | 0.986 | 0.316 | −0.088 | 0.013 | 7.1 × 10−11 | 6243 | 0.962 | 0.323 | −0.15 | 0.063 | 0.015 |
| rs66819623 | 13954397 | GPM6B | C | 0.975 | 0.572 | −0.073 | 0.013 | 6.9 × 10−10 | 6092 | 0.956 | 0.579 | −0.13 | 0.061 | 0.026 |
| rs12558081 | 43939978 | NDP/EFHC2 | A | 0.994 | 0.697 | −0.087 | 0.013 | 4.9 × 10−11 | 6323 | 0.966 | 0.610 | −0.15 | 0.064 | 0.023 |
‘SNP’ is the variant rsid, ‘Pos’ is the base pair position (Human genome build 37), ‘Locus’ is the nearest gene/s to the SNP, ‘A1’ is the reference allele, ‘Info’ is a imputation quality score (scale 0-1), ‘Freq’ is the A1 allele frequency in each cohort for this analysis, ‘Beta’ and ‘SE’ are the linear regression coefficients and respective standard errors for the A1 allele in the respective cohort, ‘P’ is the respective association P value in each cohort, ‘N’ is the sample size for the respective allele in the EPIC-Norfolk cohort.