Table 1.
Summary of transcriptomes of the protists in Coptotermes formosanus.
No. of contig | No. of CDS | ||||
---|---|---|---|---|---|
Beforea | Afterb | Beforea | Afterb | Completenessc | |
Pseudotrichonympha grassii | 41,010 | 39,825 | 27,864 | 27,334 | 79.2% (179) |
Holomastigotoides hartmanni | 123,108 | 108,262 | 87,978 | 57,788 | 54.4% (123) |
Holomastigotoides minor | 98,635 | 70,088 | 47,872 | 43,317 | 51.3% (116) |
Cononympha leidyi | 69,830 | 51,266 | 29,500 | 35,949 | 53.1% (120) |
Each transcriptome was assembled from the paired-end reads generated from three single-cell libraries. The number of contigs and CDSs longer than ≥ 300 bp and CDS ≥ 100 amino acids, respectively are shown.
aThe number of contigs and CDSs in assembly before removal of contamination.
bThe number of contigs and CDSs in assembly after removal of contamination from bacteria and nontarget protists.
cThe ratio of the detected marker gene to those of Trichomonas vaginalis. The numbers of the detected marker genes are shown in parentheses.