Skip to main content
. 2020 Jun 8;14(10):2449–2460. doi: 10.1038/s41396-020-0698-z

Table 1.

Summary of transcriptomes of the protists in Coptotermes formosanus.

No. of contig No. of CDS
Beforea Afterb Beforea Afterb Completenessc
Pseudotrichonympha grassii 41,010 39,825 27,864 27,334 79.2% (179)
Holomastigotoides hartmanni 123,108 108,262 87,978 57,788 54.4% (123)
Holomastigotoides minor 98,635 70,088 47,872 43,317 51.3% (116)
Cononympha leidyi 69,830 51,266 29,500 35,949 53.1% (120)

Each transcriptome was assembled from the paired-end reads generated from three single-cell libraries. The number of contigs and CDSs longer than ≥ 300 bp and CDS ≥ 100 amino acids, respectively are shown.

aThe number of contigs and CDSs in assembly before removal of contamination.

bThe number of contigs and CDSs in assembly after removal of contamination from bacteria and nontarget protists.

cThe ratio of the detected marker gene to those of Trichomonas vaginalis. The numbers of the detected marker genes are shown in parentheses.