Table 8.
Numbers of virulence genes of bacterial strains with real Illumina short reads and Oxford Nanopore long reads, as predicted based on their MaSuRCA, SPAdes, and Unicycler assemblies and compared to their corresponding reference genomes
| Strain | Numbers of virulence genes | |||
|---|---|---|---|---|
| MaSuRCA | SPAdes | Unicycler | Reference | |
| Escherichia coli O26:H11 CFSAN027343 | 115 | 115 | 114 | 121 |
| Escherichia coli O26:H11 CFSAN027350 | 110 | 108 | 109 | 115 |
| Klebsiella variicola CFSAN086180 | 10 | 10 | 10 | 10 |
| Klebsiella pneumonia CFSAN086181 | 10 | 10 | 10 | 10 |
| Enterobacter cancerogenus CFSAN086183 | 15 | 15 | 15 | 16 |
| Salmonella Bareilly CFSAN000189 | 109 | 109 | 109 | 111 |
| Citrobacter braakii CFSAN086182 | 23 | 23 | 23 | 22 |
| Cronobacter sakazakii CFSAN068773 | 2 | 2 | 2 | 4 |
| Listeria monocytogenes CFSAN008100 | 31 | 31 | 31 | 32 |
| Staphylococcus aureus CFSAN007894 | 63 | 63 | 63 | 63 |
| Campylobacter jejuni CFSAN032806 | 104 | 105 | 104 | 107 |
| Campylobacter coli CFSAN032805 | 76 | 76 | 76 | 77 |