Table 4.
Performance assessment for multiplicity inference using CRFs
| avg. no. | avg. no. | runtime | ||
|---|---|---|---|---|
| s | of nodes | of arcs | (10k nodes) | |
| P. aeruginosa | 0 | 1.0 | 0.0 | 0.024 s |
| 1 | 3.1 | 6.0 | 0.566 s | |
| 3 | 11.9 | 20.8 | 3.5 s | |
| 5 | 28.7 | 49.4 | 18.0 s | |
| C. elegans | 0 | 1.0 | 0.0 | 0.028 s |
| 1 | 3.8 | 10.8 | 1.292 s | |
| 3 | 23.7 | 66.1 | 46.3 s | |
| 5 | 77.1 | 210.0 | 257 s | |
| H. sapiens | 0 | 1.0 | 0.0 | 0.047 s |
| 1 | 4.4 | 14.4 | 1.974 s | |
| 3 | 32.7 | 103.9 | 76 s | |
| 5 | 115.0 | 345.7 | 605 s |
For different organisms (at 50× coverage depth) and neighbourhood sizes s, the average number of nodes and arcs in a neighbourhood are listed as well as the runtime to infer the multiplicity of 10000 nodes using a single CPU thread