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[Preprint]. 2020 Sep 10:2020.09.09.196220. [Version 1] doi: 10.1101/2020.09.09.196220

Table 1.

Biomarker table header descriptions and column content.

Header Column Content
literature_evidence PMID (PubMed ID) or DOI (DOI number)
biomarker_substance_accession UPKB (UniProtKB/Swiss-Prot ac) or PCCID (PubChem Compound ID) or CO (Cell Ontology ID) or PRO (Protein Ontology ID) or DO (Disease Ontology ID)
biomarker_name Common name or UniProtKB protein name and gene symbol or short name in parenthesis
measured_biomarker increased/decreased level or expression or counts or ratio
specimen_type Uberon name (Uberon ID)
BEST_biomarker_type monitoring; diagnostic; prognostic; predictive; risk/susceptibility; safety; pharmacodynamic/response
drug Drug name (DrugBank ID)
biomarker_description Free text from paper (preferably unedited)
curator name First and Last name
curator_ORCID ORCID
curator_notes Free text from curator
reviewer_initial Name/Initial: Free text from reviewer