Table 1.
DSM 14164T |
DSM 17497T |
DSM 15088T |
DSM 21245T |
DSM 16006T |
|
---|---|---|---|---|---|
Property |
Term |
Term |
Term |
Term |
Term |
Finishing quality |
Permanent draft, High-quality draft |
Draft, High-quality draft |
Permanent draft, High-quality draft |
Permanent draft, High-quality draft |
Permanent draft, High-quality draft |
Libraries used |
Illumina Regular Fragment, 270 bp |
Illumina Regular Fragment, 270 bp |
Illumina Regular Fragment, 270 bp |
Illumina Regular Fragment, 270 bp |
Illumina Regular Fragment, 270 bp |
Sequencing platforms |
Illumina HiSeq 2000 |
Illumina HiSeq 2000 |
Illumina HiSeq 2000 |
lumina HiSeq 2000 |
lumina HiSeq 2000 |
Average input read coverage used for the assembly |
300X |
300X |
300X |
122.2X |
122.2X |
Sequencing depth coverage |
353X |
390X |
433X |
348X |
489X |
Genome size (bp) |
6 310 792 |
6 262 860 |
5 349 493 |
5 416 882 |
5 703 346 |
G+C content (%) |
61.50 |
64.00 |
63.00 |
61.90 |
61.50 |
DNA coding (bp) |
5 646 648 |
5 610 495 |
4 791 738 |
4 843 312 |
5 162,587 |
DNA G+C (bp) |
3 880 258 |
4 004 956 |
3 368 736 |
3 349 604 |
3,507,852 |
DNA scaffolds |
86 |
56 |
59 |
68 |
37 |
Total genes |
6107 |
5916 |
4976 |
5092 |
5366 |
Protein-coding genes |
5953 |
5763 |
4847 |
4974 |
5242 |
RNA genes |
154 |
153 |
129 |
118 |
124 |
Pseudo genes |
0 |
0 |
0 |
0 |
0 |
Protein-coding genes with function prediction |
4662 |
4511 |
3972 |
4053 |
4290 |
Protein-coding genes with COGs |
4007 |
3960 |
3529 |
3670 |
3961 |
in internal clusters |
1004 |
939 |
586 |
607 |
803 |
with Pfam domains |
4918 |
4803 |
4225 |
4292 |
4619 |
with signal peptides |
657 |
634 |
511 |
532 |
626 |
with transmembrane helices |
1365 |
1311 |
1108 |
1126 |
1195 |
CRISPR repeats |
1 |
1 |
0 |
1 |
0 |
Assemblers |
vpAllpaths v. r46652 |
vpAllpaths v. r46652 |
vpAllpaths v. r46652 |
Unknown program v. before 2013-03-26 |
Unknown program v. before 2013-03-26 |
Gene-calling method |
Prodigal 2.5 |
Prodigal 2.5 |
Prodigal 2.5 |
Prodigal 2.5 |
Prodigal 2.5 |
Locus tag |
Q381 |
Q380 |
Q378 |
H620 |
H621 |
GenBank ID |
|||||
GenBank date of release |
16 August 2015 |
05 May 2014 |
05 May 2014 |
12 December 2013 |
12 December 2013 |
GOLD ID |
Gp0021953 |
Gp0039999 |
Gp0040000 |
Gp0021955 |
Gp0021956 |
BIOPROJECT |
PRJNA221052 |
PRJNA221051 |
PRJNA221049 |
PRJNA188913 |
PRJNA188914 |