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. 2019 Oct 29;1(10):e000067. doi: 10.1099/acmi.0.000067

Table 1.

Project information and genome statistics for P. monteilii DSM 14164T, P. mosselii DSM 17497T, P. plecoglossicida DSM 15088T, P. taiwanensis DSM 21245T and P. vranovensis DSM 16006T. Data obtained from the Integrated Microbial Genomes (IMG) system [23]

P. monteilii

DSM 14164T

P. mosselii

DSM 17497T

P. plecoglossicida

DSM 15088T

P. taiwanensis

DSM 21245T

P. vranovensis

DSM 16006T

Property

Term

Term

Term

Term

Term

 Finishing quality

Permanent draft,

High-quality draft

Draft,

High-quality draft

Permanent draft,

High-quality draft

Permanent draft,

High-quality draft

Permanent draft,

High-quality draft

 Libraries used

Illumina Regular Fragment, 270 bp

Illumina Regular Fragment, 270 bp

Illumina Regular Fragment, 270 bp

Illumina Regular Fragment, 270 bp

Illumina Regular Fragment, 270 bp

 Sequencing platforms

Illumina HiSeq 2000

Illumina HiSeq 2000

Illumina HiSeq 2000

lumina HiSeq 2000

lumina HiSeq 2000

 Average input read coverage used for the assembly

300X

300X

300X

122.2X

122.2X

 Sequencing depth coverage

353X

390X

433X

348X

489X

Genome size (bp)

6 310 792

6 262 860

5 349 493

5 416 882

5 703 346

G+C content (%)

61.50

64.00

63.00

61.90

61.50

DNA coding (bp)

5 646 648

5 610 495

4 791 738

4 843 312

5 162,587

DNA G+C (bp)

3 880 258

4 004 956

3 368 736

3 349 604

3,507,852

DNA scaffolds

86

56

59

68

37

Total genes

6107

5916

4976

5092

5366

Protein-coding genes

5953

5763

4847

4974

5242

RNA genes

154

153

129

118

124

Pseudo genes

0

0

0

0

0

Protein-coding genes with function prediction

4662

4511

3972

4053

4290

Protein-coding genes with COGs

4007

3960

3529

3670

3961

 in internal clusters

1004

939

586

607

803

 with Pfam domains

4918

4803

4225

4292

4619

 with signal peptides

657

634

511

532

626

 with transmembrane helices

1365

1311

1108

1126

1195

CRISPR repeats

1

1

0

1

0

 Assemblers

vpAllpaths v. r46652

vpAllpaths v. r46652

vpAllpaths v. r46652

Unknown program v. before 2013-03-26

Unknown program v. before 2013-03-26

 Gene-calling method

Prodigal 2.5

Prodigal 2.5

Prodigal 2.5

Prodigal 2.5

Prodigal 2.5

 Locus tag

Q381

Q380

Q378

H620

H621

 GenBank ID

JHYV01000000

JHYW01000000

JHYX01000000

AUEC01000000

AUED01000000

 GenBank date of release

16 August 2015

05 May 2014

05 May 2014

12 December 2013

12 December 2013

 GOLD ID

Gp0021953

Gp0039999

Gp0040000

Gp0021955

Gp0021956

 BIOPROJECT

PRJNA221052

PRJNA221051

PRJNA221049

PRJNA188913

PRJNA188914