Table 3.
Genes included in the mobilome category for P. monteilii DSM 14164T, P. mosselii DSM 17497T, P. plecoglossicida DSM 15088T, P. taiwanensis DSM 21245T and P. vranovensis DSM 16006T
Number of genes, their ID and their position in the chromosome are indicated for each type of mobile element detected.
|
DSM 14164T |
DSM 17497T |
DSM 15088T |
DSM 21245T |
DSM 16006T |
|
|---|---|---|---|---|---|
|
Type of mobile genes |
Q381DRAFT_ |
Q380DRAFT_ |
Q378DRAFT_ |
H620DRAFT_ |
H621DRAFT_ |
|
Prophage 1 |
01819-01853 35 genes |
01539-01552 14 genes |
02943-02992 50 genes |
04595-04663 69 genes |
00220-00266 47 genes |
|
Prophage 2 |
02854-028278 24 genes |
03320-03375 56 genes |
|
|
00490-00413 78 genes |
|
Prophage 3 |
|
03884-03919 36 genes |
|
|
01743-01765 23 genes |
|
Prophage 4 |
|
04931-04946 16 genes |
|
|
|
|
Prophage 5 |
|
O5397-05413 17 genes |
|
|
|
|
ICE 1 |
0920-0979 60 genes |
03803-03835 34 genes |
|
|
|
|
ICE 2 |
01690-1730 41 genes |
04259-04325 67 genes |
|
|
|
|
ICE 3 |
04874-04969 34 genes |
00238-00317 76 genes |
|
|
|
|
Mobile element 1 |
00610-00591 20 genes |
05448-05482 35 genes |
|
|
|
|
Mobile element 2 |
05230-05241 12 genes |
|
|
|
|
|
CRISPR array count |
2 |
1 |
|
1 |
|
|
Transposases and insertion elements |
86 |
61 |
42 |
13 |
22 |
|
Integrases |
17 |
10 |
8 |
6 |
10 |
ICE: Integrating chromosomal element; CRISPR: clustered regularly interspaced short palindromic repeats.