Table 3.
OTUs with significant differential abundance between time points (alpha ≤ 0.05).
| Taxon | OTU | Dry-off | Calving | 5 DIM | p-value |
|---|---|---|---|---|---|
| Phylum | Tenericutes | 57.80 | 1.30 | 17.30 | 1.39e-03 |
| Phylum | Cyanobacteria | 270.50 | 2586.15 | 8457.60 | 2.56e-02 |
| Class | Mollicutes | 49.45 | 0.95 | 17.30 | 1.66e-03 |
| Class | Clostridia | 12480.30 | 3593.15 | 2885.95 | 9.03e-03 |
| Class | Verruco-5 | 24.70 | 1.95 | 0.00 | 1.93e-02 |
| Class | 4C0d-2 | 119.00 | 25.40 | 0.05 | 2.01e-02 |
| Class | Chloroplast | 148.40 | 2506.65 | 8450.05 | 2.37e-02 |
| Class | Bacteroidia | 3646.05 | 755.60 | 756.25 | 3.14e-02 |
| Order | RF39 | 15.40 | 0.75 | 2.50 | 5.37e-05 |
| Order | Chlorophyta | 1.10 | 545.95 | 1268.30 | 3.18e-04 |
| order | Clostridiales | 12454.70 | 3304.15 | 2732.80 | 9.55e-03 |
| Order | Aeromonadales | 325.10 | 17.20 | 32.25 | 1.75e-02 |
| Order | Rhodospirillales | 42.05 | 277.95 | 599.15 | 1.88e-02 |
| Order | WCHB1-41 | 24.70 | 1.95 | 0.00 | 1.93e-02 |
| Order | YS2 | 119.00 | 25.40 | 0.05 | 2.01e-02 |
| Order | Bacteroidales | 3646.05 | 755.60 | 756.25 | 3.14e-02 |
| Order | Anaeroplasmatales | 16.90 | 0.05 | 0.00 | 3.74e-02 |
| Order | Streptophyta | 107.45 | 1959.00 | 7178.40 | 3.83e-02 |
| Family | Peptococcaceae | 75.85 | 7.65 | 5.00 | 2.52e-05 |
| Family | RF16 | 185.40 | 18.05 | 27.20 | 1.35e-03 |
| Family | Clostridiaceae | 1740.15 | 709.35 | 384.25 | 1.86e-03 |
| Family | S24-7 | 189.95 | 40.20 | 3.80 | 4.12e-03 |
| Family | Ruminococcaceae | 4620.30 | 881.80 | 733.45 | 9.30e-03 |
| Family | Lachnospiraceae | 2374.00 | 327.95 | 450.35 | 9.47e-03 |
| Family | Moraxellaceae | 2245.30 | 2558.45 | 6109.85 | 1.36e-02 |
| Family | Rhodospirillaceae | 31.35 | 267.65 | 592.85 | 1.74e-02 |
| Family | RFP12 | 24.70 | 1.95 | 0.00 | 1.93e-02 |
| Family | p-2534-18B5 | 15.80 | 1.40 | 0.15 | 2.10e-02 |
| Family | Carnobacteriaceae | 160.35 | 95.05 | 353.90 | 2.13e-02 |
| Family | Peptostreptococcaceae | 460.85 | 91.25 | 144.20 | 2.17e-02 |
| Family | Succinivibrionaceae | 323.00 | 7.05 | 28.40 | 2.40e-02 |
| Family | Rikenellaceae | 349.95 | 61.75 | 85.25 | 3.15e-02 |
| Family | Bacteroidaceae | 1261.20 | 329.30 | 244.50 | 3.16e-02 |
| Family | Anaeroplasmataceae | 16.90 | 0.05 | 0.00 | 3.74e-02 |
| Genus | rc4-4 | 70.10 | 6.90 | 0.05 | 6.46e-06 |
| Genus | Salinicoccus | 34.90 | 0.00 | 0.50 | 4.63e-05 |
| Genus | Dorea | 267.80 | 26.40 | 25.30 | 4.91e-05 |
| Genus | Ruminococcus | 275.20 | 50.10 | 21.95 | 7.89e-04 |
| Genus | YRC22 | 82.90 | 8.50 | 3.05 | 7.93e-04 |
| Genus | Succinivibrio | 145.50 | 4.25 | 18.50 | 1.54e-03 |
| Genus | Alloiococcus | 78.75 | 10.10 | 7.20 | 2.30e-03 |
| Genus | GW-34 | 26.20 | 0.00 | 0.80 | 2.66e-03 |
| Genus | Mogibacterium | 13.90 | 4.20 | 0.65 | 5.32e-03 |
| Genus | [Clostridium] | 121.20 | 22.10 | 37.10 | 7.77e-03 |
| Genus | SMB53 | 768.40 | 336.95 | 183.80 | 8.80e-03 |
| Genus | Limnohabitans | 0.45 | 2.20 | 26.45 | 9.91e-03 |
| Genus | Helcococcus | 14.75 | 0.05 | 0.00 | 1.38e-02 |
| genus | Polaromonas | 0.00 | 2.30 | 29.70 | 1.45e-02 |
| Genus | Epulopiscium | 91.05 | 21.25 | 1.00 | 1.46e-02 |
| Genus | Phascolarctobacterium | 989.60 | 288.30 | 132.85 | 1.79e-02 |
| Genus | Roseburia | 51.90 | 3.10 | 15.80 | 2.16e-02 |
| Genus | Butyrivibrio | 448.50 | 108.40 | 160.55 | 2.24e-02 |
| Genus | Clostridium | 159.15 | 63.90 | 41.00 | 2.28e-02 |
| Genus | Propionicimonas | 38.55 | 1.00 | 0.20 | 2.98e-02 |
| Genus | Coprococcus | 153.25 | 28.35 | 40.10 | 3.03e-02 |
| Genus | 5-7N15 | 1084.85 | 225.20 | 220.15 | 3.16e-02 |
| Genus | Anaerostipes | 92.35 | 4.85 | 26.75 | 3.36e-02 |
| Genus | Ruminobacter | 165.80 | 0.50 | 5.15 | 4.32e-02 |
| Genus | [Ruminococcus] | 67.35 | 12.60 | 20.10 | 4.47e-02 |
| Genus | Erythrobacter | 5.90 | 27.90 | 2.65 | 4.63e-02 |
| Genus | Rummeliibacillus | 370.80 | 84.35 | 135.55 | 4.90e-02 |
Taxonomic level, specific OTU, counts at dry-off, calving, and 5 DIM, p-value.